| MirGeneDB ID | Pab-Mir-154-P31 |
|---|---|
| Family name | MIR-154 (all species) |
| Seed | GGUCGAC |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-154-P1 Pab-Mir-154-P2-v1 Pab-Mir-154-P2-v2 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Pab-Mir-154-P4 Pab-Mir-154-P5 Pab-Mir-154-P6a-v1 Pab-Mir-154-P6a-v2 Pab-Mir-154-P6b Pab-Mir-154-P7 Pab-Mir-154-P8a Pab-Mir-154-P8b Pab-Mir-154-P9 Pab-Mir-154-P10 Pab-Mir-154-P11 Pab-Mir-154-P12 Pab-Mir-154-P14 Pab-Mir-154-P16a Pab-Mir-154-P16b Pab-Mir-154-P17 Pab-Mir-154-P18 Pab-Mir-154-P19 Pab-Mir-154-P20 Pab-Mir-154-P21 Pab-Mir-154-P23 Pab-Mir-154-P24 Pab-Mir-154-P25 Pab-Mir-154-P26 Pab-Mir-154-P28 Pab-Mir-154-P29 Pab-Mir-154-P30 Pab-Mir-154-P32 Pab-Mir-154-P33 Pab-Mir-154-P34 |
| Orthologues | Bta-Mir-154-P31 Cfa-Mir-154-P31 Cja-Mir-154-P31 Cpo-Mir-154-P31 Dno-Mir-154-P31 Eca-Mir-154-P31 Ete-Mir-154-P31 Hsa-Mir-154-P31 Laf-Mir-154-P31 Mml-Mir-154-P31 Mmr-Mir-154-P31 Mmu-Mir-154-P31 Rno-Mir-154-P31 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054694.2: 105497485-105497539 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AUCAGCACCAUUCUGGGGUACGGGGAUGGAUGGUCGACCAGUUGGAAAGUAAUUGUUUCUAAUGUACUUCACCUGGUCCACUAGCCGUCCGUAUCCGCUGCAGCCUGUGGGGCCUGet precursor sequence |
| Structure | 10 20 30 40 50 AUCAGCACCAUUCUGGGGUA GG C----| U AA AUUGUU CGG AUGGAUGGU GACCAG UGG AGUA \ GCC UGCCUGCCG CUGGUC ACU UCAU U UCCGGGGUGUCCGACGUC-- UA AUCAC^ C -- GUAAUC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Pab-Mir-154-P31_5p |
| mirBase accession | None |
| Sequence |
0- UGGUCGACCAGUUGGAAAGUAAU -23
Get sequence
|
| Star sequence | Pab-Mir-154-P31_3p* (predicted) |
| mirBase accession | None |
| Sequence |
34- UACUUCACCUGGUCCACUAGC -55
Get sequence
|
