MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-154-P31

Family name MIR-154 (all species)
Seed GGUCGAC
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-154-P1  Laf-Mir-154-P2  Laf-Mir-154-P3  Laf-Mir-154-P4  Laf-Mir-154-P5  Laf-Mir-154-P6a  Laf-Mir-154-P6b  Laf-Mir-154-P6c  Laf-Mir-154-P7  Laf-Mir-154-P8  Laf-Mir-154-P9  Laf-Mir-154-P10  Laf-Mir-154-P11  Laf-Mir-154-P12  Laf-Mir-154-P15  Laf-Mir-154-P16  Laf-Mir-154-P17  Laf-Mir-154-P18  Laf-Mir-154-P19  Laf-Mir-154-P20  Laf-Mir-154-P21  Laf-Mir-154-P22  Laf-Mir-154-P23  Laf-Mir-154-P24  Laf-Mir-154-P25  Laf-Mir-154-P26  Laf-Mir-154-P27  Laf-Mir-154-P28  Laf-Mir-154-P29  Laf-Mir-154-P30  Laf-Mir-154-P32  Laf-Mir-154-P33  Laf-Mir-154-P34 
Orthologues Bta-Mir-154-P31  Cfa-Mir-154-P31  Cja-Mir-154-P31  Cpo-Mir-154-P31  Dno-Mir-154-P31  Eca-Mir-154-P31  Ete-Mir-154-P31  Hsa-Mir-154-P31  Mml-Mir-154-P31  Mmr-Mir-154-P31  Mmu-Mir-154-P31  Pab-Mir-154-P31  Rno-Mir-154-P31 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010036.1: 75516896-75516950 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUCACACCACUCUGGGGCGCGGGGAUGGAUGGUCGACCAGUUGGAAAGUAAUUGUUUAUAAUGUACUUCACCUGGUCCACUAGCCGUCGGUGCCCACUGCAGCCUGCGGCCCGC
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Structure
        10        20        30            40        50        
CGUCACACCACUCUGGGGCGC   G  G      C----|     U   AA    AUUGUU 
                     GGG AU GAUGGU     GACCAG UGG  AGUA      \
                     CCC UG CUGCCG     CUGGUC ACU  UCAU      U
CGCCCGGCGUCCGACGUCA--   G  G      AUCAC^     C   --    GUAAUA 
   110       100          90        80        70          60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Wh
Mature sequence

Laf-Mir-154-P31_5p (predicted)
mirBase accessionNone
Sequence 
0- UGGUCGACCAGUUGGAAAGUAAU -23
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Star sequence

Laf-Mir-154-P31_3p* (predicted)
mirBase accessionNone
Sequence 
34- UACUUCACCUGGUCCACUAGC -55
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