| MirGeneDB ID | Laf-Mir-154-P31 |
|---|---|
| Family name | MIR-154 (all species) |
| Seed | GGUCGAC |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | Laf-Mir-154-P1 Laf-Mir-154-P2 Laf-Mir-154-P3 Laf-Mir-154-P4 Laf-Mir-154-P5 Laf-Mir-154-P6a Laf-Mir-154-P6b Laf-Mir-154-P6c Laf-Mir-154-P7 Laf-Mir-154-P8 Laf-Mir-154-P9 Laf-Mir-154-P10 Laf-Mir-154-P11 Laf-Mir-154-P12 Laf-Mir-154-P15 Laf-Mir-154-P16 Laf-Mir-154-P17 Laf-Mir-154-P18 Laf-Mir-154-P19 Laf-Mir-154-P20 Laf-Mir-154-P21 Laf-Mir-154-P22 Laf-Mir-154-P23 Laf-Mir-154-P24 Laf-Mir-154-P25 Laf-Mir-154-P26 Laf-Mir-154-P27 Laf-Mir-154-P28 Laf-Mir-154-P29 Laf-Mir-154-P30 Laf-Mir-154-P32 Laf-Mir-154-P33 Laf-Mir-154-P34 |
| Orthologues | Bta-Mir-154-P31 Cfa-Mir-154-P31 Cja-Mir-154-P31 Cpo-Mir-154-P31 Dno-Mir-154-P31 Eca-Mir-154-P31 Ete-Mir-154-P31 Hsa-Mir-154-P31 Mml-Mir-154-P31 Mmr-Mir-154-P31 Mmu-Mir-154-P31 Pab-Mir-154-P31 Rno-Mir-154-P31 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010036.1: 75516896-75516950 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CGUCACACCACUCUGGGGCGCGGGGAUGGAUGGUCGACCAGUUGGAAAGUAAUUGUUUAUAAUGUACUUCACCUGGUCCACUAGCCGUCGGUGCCCACUGCAGCCUGCGGCCCGCGet precursor sequence |
| Structure | 10 20 30 40 50 CGUCACACCACUCUGGGGCGC G G C----| U AA AUUGUU GGG AU GAUGGU GACCAG UGG AGUA \ CCC UG CUGCCG CUGGUC ACU UCAU U CGCCCGGCGUCCGACGUCA-- G G AUCAC^ C -- GUAAUA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Laf-Mir-154-P31_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGGUCGACCAGUUGGAAAGUAAU -23
Get sequence
|
| Star sequence | Laf-Mir-154-P31_3p* (predicted) |
| mirBase accession | None |
| Sequence |
34- UACUUCACCUGGUCCACUAGC -55
Get sequence
|
