MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-154-P6a

Family name MIR-154 (all species)
Seed CACAUUA
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-154-P1  Laf-Mir-154-P2  Laf-Mir-154-P3  Laf-Mir-154-P4  Laf-Mir-154-P5  Laf-Mir-154-P6b  Laf-Mir-154-P6c  Laf-Mir-154-P7  Laf-Mir-154-P8  Laf-Mir-154-P9  Laf-Mir-154-P10  Laf-Mir-154-P11  Laf-Mir-154-P12  Laf-Mir-154-P15  Laf-Mir-154-P16  Laf-Mir-154-P17  Laf-Mir-154-P18  Laf-Mir-154-P19  Laf-Mir-154-P20  Laf-Mir-154-P21  Laf-Mir-154-P22  Laf-Mir-154-P23  Laf-Mir-154-P24  Laf-Mir-154-P25  Laf-Mir-154-P26  Laf-Mir-154-P27  Laf-Mir-154-P28  Laf-Mir-154-P29  Laf-Mir-154-P30  Laf-Mir-154-P31  Laf-Mir-154-P32  Laf-Mir-154-P33  Laf-Mir-154-P34 
Orthologues Bta-Mir-154-P6a-v1  Bta-Mir-154-P6a-v2  Cfa-Mir-154-P6a-v1  Cfa-Mir-154-P6a-v2  Cja-Mir-154-P6a  Cpo-Mir-154-P6a-v1  Cpo-Mir-154-P6a-v2  Dno-Mir-154-P6a-v1  Dno-Mir-154-P6a-v2  Eca-Mir-154-P6a-v1  Eca-Mir-154-P6a-v2  Ete-Mir-154-P6a-v1  Ete-Mir-154-P6a-v2  Hsa-Mir-154-P6a-v1  Hsa-Mir-154-P6a-v2  Mml-Mir-154-P6a-v1  Mml-Mir-154-P6a-v2  Mmr-Mir-154-P6a-v1  Mmr-Mir-154-P6a-v2  Mmu-Mir-154-P6a-v1  Mmu-Mir-154-P6a-v2  Ocu-Mir-154-P6a-v1  Ocu-Mir-154-P6a-v2  Pab-Mir-154-P6a-v1  Pab-Mir-154-P6a-v2  Rno-Mir-154-P6a-v1  Rno-Mir-154-P6a-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010036.1: 75558547-75558602 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGUACUGCUGCUGCUUGGUACUUGGAGAGAGGUGGUCCGUGGCGCGUUCGCUUUAUUUAUGGCGCACAUUACACGGUCGACCUCUUUUCAGUAUCUAAUCCCGCCUUGCAAGCUU
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Structure
        10           20        30         40        50       
CAGUACUGCUGCUGCUU---|     U          -  U     GCGC  U   UUUA 
                    GGUACU GGAGAGAGGU GG CCGUG    GU CGC    U
                    CUAUGA CUUUUCUCCA CU GGCAC    CA GCG    U
UUCGAACGUUCCGCCCUAAU^     -          G  -     AUUA  C   GUAU 
    110       100         90        80         70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Star sequence

Laf-Mir-154-P6a_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGUGGUCCGUGGCGCGUUCGC -22
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Mature sequence

Laf-Mir-154-P6a_3p
mirBase accessionNone
Sequence 
34- GCACAUUACACGGUCGACCUCU -56
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