Mir-154-P6a-v1

MirGeneDB ID

Cfa-Mir-154-P6a-v1

Family name

MIR-154 (all species)

Seed

ACAUUAC

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-323

Paralogues

Cfa-Mir-154-P1 Cfa-Mir-154-P2-v1 Cfa-Mir-154-P2-v2 Cfa-Mir-154-P3-v1 Cfa-Mir-154-P3-v2 Cfa-Mir-154-P4 Cfa-Mir-154-P5 Cfa-Mir-154-P6a-v2 Cfa-Mir-154-P6b Cfa-Mir-154-P6c Cfa-Mir-154-P7 Cfa-Mir-154-P8a Cfa-Mir-154-P8b Cfa-Mir-154-P9 Cfa-Mir-154-P10 Cfa-Mir-154-P11 Cfa-Mir-154-P12 Cfa-Mir-154-P13 Cfa-Mir-154-P14 Cfa-Mir-154-P15 Cfa-Mir-154-P16 Cfa-Mir-154-P17 Cfa-Mir-154-P18 Cfa-Mir-154-P19 Cfa-Mir-154-P20 Cfa-Mir-154-P21 Cfa-Mir-154-P22 Cfa-Mir-154-P23 Cfa-Mir-154-P24 Cfa-Mir-154-P25 Cfa-Mir-154-P28 Cfa-Mir-154-P29 Cfa-Mir-154-P30 Cfa-Mir-154-P31 Cfa-Mir-154-P32 Cfa-Mir-154-P33 Cfa-Mir-154-P34 Cfa-Mir-154-P35

Orthologues

Bta-Mir-154-P6a-v1 Bta-Mir-154-P6a-v2 Cja-Mir-154-P6a Cpo-Mir-154-P6a-v1 Cpo-Mir-154-P6a-v2 Dno-Mir-154-P6a-v1 Dno-Mir-154-P6a-v2 Eca-Mir-154-P6a-v1 Eca-Mir-154-P6a-v2 Ete-Mir-154-P6a-v1 Ete-Mir-154-P6a-v2 Hsa-Mir-154-P6a-v1 Hsa-Mir-154-P6a-v2 Laf-Mir-154-P6a Mml-Mir-154-P6a-v1 Mml-Mir-154-P6a-v2 Mmr-Mir-154-P6a-v1 Mmr-Mir-154-P6a-v2 Mmu-Mir-154-P6a-v1 Mmu-Mir-154-P6a-v2 Ocu-Mir-154-P6a-v1 Ocu-Mir-154-P6a-v2 Pab-Mir-154-P6a-v1 Pab-Mir-154-P6a-v2 Rno-Mir-154-P6a-v1 Rno-Mir-154-P6a-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(canFam3_add)

chr8: 69257494-69257549 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P6a-v1)

Mir-154-P1 chr8: 69253808-69253866 [+] UCSC Ensembl
Mir-154-P2-v2 chr8: 69255094-69255151 [+] UCSC Ensembl
Mir-154-P2-v1 chr8: 69255095-69255150 [+] UCSC Ensembl
Mir-154-P3-v1 chr8: 69255553-69255607 [+] UCSC Ensembl
Mir-154-P3-v2 chr8: 69255554-69255606 [+] UCSC Ensembl
Mir-154-P4 chr8: 69256764-69256820 [+] UCSC Ensembl
Mir-154-P6a-v2 chr8: 69257494-69257549 [+] UCSC Ensembl
Mir-154-P6a-v1 chr8: 69257494-69257549 [+] UCSC Ensembl
Mir-154-P7 chr8: 69257795-69257852 [+] UCSC Ensembl
Mir-154-P8a chr8: 69258540-69258597 [+] UCSC Ensembl
Mir-154-P8b chr8: 69258856-69258913 [+] UCSC Ensembl
Mir-154-P9 chr8: 69261399-69261454 [+] UCSC Ensembl
Mir-154-P11 chr8: 69263406-69263463 [+] UCSC Ensembl
Mir-154-P12 chr8: 69265169-69265226 [+] UCSC Ensembl
Mir-154-P35 chr8: 69267179-69267234 [+] UCSC Ensembl
Mir-376-P1 chr8: 69269753-69269810 [+] UCSC Ensembl
Mir-376-P2 chr8: 69270115-69270172 [+] UCSC Ensembl
Mir-376-P3 chr8: 69270499-69270556 [+] UCSC Ensembl
Mir-376-P4 chr8: 69270881-69270938 [+] UCSC Ensembl
Mir-376-P5 chr8: 69271259-69271316 [+] UCSC Ensembl
Mir-154-P15 chr8: 69271824-69271885 [+] UCSC Ensembl
Mir-154-P16 chr8: 69273238-69273297 [+] UCSC Ensembl
Mir-154-P17 chr8: 69274990-69275052 [+] UCSC Ensembl
Mir-154-P18 chr8: 69275495-69275554 [+] UCSC Ensembl
Mir-154-P19 chr8: 69276318-69276381 [+] UCSC Ensembl
Mir-154-P20 chr8: 69276881-69276939 [+] UCSC Ensembl
Mir-544-P1 chr8: 69277674-69277730 [+] UCSC Ensembl
Mir-154-P23 chr8: 69281090-69281147 [+] UCSC Ensembl
Mir-154-P24 chr8: 69283122-69283179 [+] UCSC Ensembl
Mir-134 chr8: 69283503-69283563 [+] UCSC Ensembl
Mir-154-P25 chr8: 69284239-69284297 [+] UCSC Ensembl
Mir-154-P28 chr8: 69289429-69289482 [+] UCSC Ensembl
Mir-154-P29 chr8: 69290943-69291002 [+] UCSC Ensembl
Mir-154-P30 chr8: 69293782-69293835 [+] UCSC Ensembl
Mir-154-P32 chr8: 69294073-69294128 [+] UCSC Ensembl
Mir-154-P33 chr8: 69294377-69294432 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAGUACUGCUGCUGCUUGGUACUUGGAGAGAGGUGGUCCGUGGCGCGUUCGCUUUAUUUAUGGCGCACAUUACACGGUCGACCUCUUUGCAGUAUCUAAUCCCGCCUUGCAAGCUU

Get precursor sequence

Structure

        10           20        30         40              50    
CAGUACUGCUGCUGCUU---     U  G        -  U     ------|   GUUCGCU 
                    GGUAC UG AGAGAGGU GG CCGUG      GCGC       U
                    CUAUG AC UUUCUCCA CU GGCAC      CGCG       U
UUCGAACGUUCCGCCCUAAU     -  G        G  -     AUUACA^   GUAUUUA 
    110       100         90        80         70        60

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut -1 on the 3p arm relative to annotated here.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-154-P6a-v1_5p*

mirBase accession

None

Sequence

0- AGGUGGUCCGUGGCGCGUUCG -21

Get sequence

Mature sequence

Cfa-Mir-154-P6a-v1_3p

mirBase accession

MIMAT0006718

Sequence

35- CACAUUACACGGUCGACCUCU -56

Get sequence

Proposed targets

TargetScanVert: cfa-miR-323
miRDB: MIMAT0006718