Mir-154-P20

MirGeneDB ID

Cfa-Mir-154-P20

Family name

MIR-154 (all species)

Seed

GAGUAUU

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-496

Paralogues

Cfa-Mir-154-P2-v1 Cfa-Mir-154-P2-v2 Cfa-Mir-154-P3a-v1 Cfa-Mir-154-P3a-v2 Cfa-Mir-154-P3b Cfa-Mir-154-P4a Cfa-Mir-154-P4b Cfa-Mir-154-P5 Cfa-Mir-154-P6 Cfa-Mir-154-P7 Cfa-Mir-154-P8 Cfa-Mir-154-P9 Cfa-Mir-154-P10 Cfa-Mir-154-P12 Cfa-Mir-154-P13 Cfa-Mir-154-P14 Cfa-Mir-154-P15 Cfa-Mir-154-P16 Cfa-Mir-154-P17 Cfa-Mir-154-P18 Cfa-Mir-154-P19 Cfa-Mir-154-P21 Cfa-Mir-154-P22 Cfa-Mir-154-P23 Cfa-Mir-154-P24 Cfa-Mir-154-P25 Cfa-Mir-154-P26 Cfa-Mir-154-P27 Cfa-Mir-154-P28 Cfa-Mir-154-P29 Cfa-Mir-154-P30 Cfa-Mir-154-P31 Cfa-Mir-154-P33 Cfa-Mir-154-P34 Cfa-Mir-154-P35 Cfa-Mir-154-P36

Orthologues

Bta-Mir-154-P20 Cpo-Mir-154-P20-v1 Cpo-Mir-154-P20-v2 Dno-Mir-154-P20-v1 Dno-Mir-154-P20-v2 Ete-Mir-154-P20-v1 Ete-Mir-154-P20-v2 Hsa-Mir-154-P20-v1 Hsa-Mir-154-P20-v2 Mml-Mir-154-P20-v1 Mml-Mir-154-P20-v2 Mmu-Mir-154-P20-v1 Mmu-Mir-154-P20-v2 Ocu-Mir-154-P20-v1 Ocu-Mir-154-P20-v2 Rno-Mir-154-P20-v1 Rno-Mir-154-P20-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(canFam3_add)

chr8: 69289429-69289482 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P20)

Mir-154-P7 chr8: 69253808-69253866 [+] UCSC Ensembl
Mir-154-P13 chr8: 69255095-69255150 [+] UCSC Ensembl
Mir-154-P2-v1 chr8: 69255553-69255607 [+] UCSC Ensembl
Mir-154-P2-v2 chr8: 69255554-69255606 [+] UCSC Ensembl
Mir-154-P8 chr8: 69256764-69256820 [+] UCSC Ensembl
Mir-154-P3a-v1 chr8: 69257494-69257549 [+] UCSC Ensembl
Mir-154-P3a-v2 chr8: 69257494-69257549 [+] UCSC Ensembl
Mir-154-P26 chr8: 69257795-69257852 [+] UCSC Ensembl
Mir-154-P4a chr8: 69258540-69258597 [+] UCSC Ensembl
Mir-154-P4b chr8: 69258856-69258913 [+] UCSC Ensembl
Mir-154-P18 chr8: 69261399-69261454 [+] UCSC Ensembl
Mir-154-P22 chr8: 69263406-69263463 [+] UCSC Ensembl
Mir-154-P19 chr8: 69265169-69265226 [+] UCSC Ensembl
Mir-154-P33 chr8: 69267179-69267234 [+] UCSC Ensembl
Mir-376-P5 chr8: 69269753-69269810 [+] UCSC Ensembl
Mir-376-P4 chr8: 69270115-69270172 [+] UCSC Ensembl
Mir-376-P3 chr8: 69270499-69270556 [+] UCSC Ensembl
Mir-376-P2 chr8: 69270881-69270938 [+] UCSC Ensembl
Mir-376-P1 chr8: 69271259-69271316 [+] UCSC Ensembl
Mir-154-P34 chr8: 69271824-69271885 [+] UCSC Ensembl
Mir-154-P28 chr8: 69273238-69273297 [+] UCSC Ensembl
Mir-154-P9 chr8: 69274990-69275052 [+] UCSC Ensembl
Mir-154-P17 chr8: 69275495-69275554 [+] UCSC Ensembl
Mir-154-P21 chr8: 69276318-69276381 [+] UCSC Ensembl
Mir-154-P27 chr8: 69276881-69276939 [+] UCSC Ensembl
Mir-544-P1 chr8: 69277674-69277731 [+] UCSC Ensembl
Mir-154-P16 chr8: 69281090-69281147 [+] UCSC Ensembl
Mir-154-P10 chr8: 69283122-69283179 [+] UCSC Ensembl
Mir-134 chr8: 69283503-69283563 [+] UCSC Ensembl
Mir-154-P15 chr8: 69284239-69284297 [+] UCSC Ensembl
Mir-154-P20 chr8: 69289429-69289482 [+] UCSC Ensembl
Mir-154-P6 chr8: 69290943-69291002 [+] UCSC Ensembl
Mir-154-P36 chr8: 69293782-69293835 [+] UCSC Ensembl
Mir-154-P5 chr8: 69294073-69294128 [+] UCSC Ensembl
Mir-154-P12 chr8: 69294377-69294432 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCAGGACCCGAGUCAGGUACUUGAAUGGAGGUUGUCCAUGGUGUGUUCAUUUUAUUUAUGAUGAGUAUUACAUGGCCAAUCUCCUUUCAGUACUAAAUUCUUCUUGGGAAAAC

Get precursor sequence

Structure

        10           20        30        40        50      
GCCAGGACCCGAGUCAG---|    U   U        U     GU         UUA 
                    GUACU GAA GGAGGUUG CCAUG  GUGUUCAUU   U
                    CAUGA CUU CCUCUAAC GGUAC  UAUGAGUAG   U
CAAAAGGGUUCUUCUUAAAU^    -   U        C     AU         UAU 
  110       100        90         80        70        60

Deep sequencing

Go to detailed chart

Comment

Dog and cow do not express the second version that the other eutherians express.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Ce	Co	He	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-154-P20_5p*

mirBase accession

None

Sequence

0- GGUUGUCCAUGGUGUGUUCAUU -22

Get sequence

Mature sequence

Cfa-Mir-154-P20_3p

mirBase accession

MIMAT0009906

Sequence

32- UGAGUAUUACAUGGCCAAUCUC -54

Get sequence

Proposed targets

TargetScanVert: cfa-miR-496
miRDB: MIMAT0009906