| MirGeneDB ID | Pab-Mir-154-P20 |
|---|---|
| Family name | MIR-154 (all species) |
| Seed | UAAUAUC |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-154-P1 Pab-Mir-154-P2-v1 Pab-Mir-154-P2-v2 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Pab-Mir-154-P4 Pab-Mir-154-P5 Pab-Mir-154-P6a-v1 Pab-Mir-154-P6a-v2 Pab-Mir-154-P6b Pab-Mir-154-P7 Pab-Mir-154-P8a Pab-Mir-154-P8b Pab-Mir-154-P9 Pab-Mir-154-P10 Pab-Mir-154-P11 Pab-Mir-154-P12 Pab-Mir-154-P14 Pab-Mir-154-P16a Pab-Mir-154-P16b Pab-Mir-154-P17 Pab-Mir-154-P18 Pab-Mir-154-P19 Pab-Mir-154-P21 Pab-Mir-154-P23 Pab-Mir-154-P24 Pab-Mir-154-P25 Pab-Mir-154-P26 Pab-Mir-154-P28 Pab-Mir-154-P29 Pab-Mir-154-P30 Pab-Mir-154-P31 Pab-Mir-154-P32 Pab-Mir-154-P33 Pab-Mir-154-P34 |
| Orthologues | Cfa-Mir-154-P20 Cja-Mir-154-P20 Cpo-Mir-154-P20 Dno-Mir-154-P20 Eca-Mir-154-P20 Ete-Mir-154-P20 Hsa-Mir-154-P20 Laf-Mir-154-P20 Mml-Mir-154-P20 Mmr-Mir-154-P20 Ocu-Mir-154-P20 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054694.2: 105479902-105479960 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CUUGAUGGCACAGUUCUUUGGUGCUUAAAGAAUGGCUGUCCGUAGUAUGGUCUCUAUAUUUAUGAUGAUUAAUAUCGGACAACCAUUGUUUUAGUAUCCAAAUUUGCUUCCGAAGUUUUGet precursor sequence |
| Structure | 10 20 30 40 50 CUUGAUGGCACAGUUCU- -| U G C UAGUA UCUAUA UUGG UGCU AAA AAUGG UGUCCG UGGUC U AACC AUGA UUU UUACC ACAGGC AUUAG U UUUUGAAGCCUUCGUUUA U^ U G A UAUA- UAGUAU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Pab-Mir-154-P20_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AAUGGCUGUCCGUAGUAUGGUC -22
Get sequence
|
| Mature sequence | Pab-Mir-154-P20_3p |
| mirBase accession | None |
| Sequence |
38- UUAAUAUCGGACAACCAUUGU -59
Get sequence
|
