MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-154-P20

Family name MIR-154 (all species)
Seed UAAUAUC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-154-P1  Pab-Mir-154-P2-v1  Pab-Mir-154-P2-v2  Pab-Mir-154-P3-v1  Pab-Mir-154-P3-v2  Pab-Mir-154-P4  Pab-Mir-154-P5  Pab-Mir-154-P6a-v1  Pab-Mir-154-P6a-v2  Pab-Mir-154-P6b  Pab-Mir-154-P7  Pab-Mir-154-P8a  Pab-Mir-154-P8b  Pab-Mir-154-P9  Pab-Mir-154-P10  Pab-Mir-154-P11  Pab-Mir-154-P12  Pab-Mir-154-P14  Pab-Mir-154-P16a  Pab-Mir-154-P16b  Pab-Mir-154-P17  Pab-Mir-154-P18  Pab-Mir-154-P19  Pab-Mir-154-P21  Pab-Mir-154-P23  Pab-Mir-154-P24  Pab-Mir-154-P25  Pab-Mir-154-P26  Pab-Mir-154-P28  Pab-Mir-154-P29  Pab-Mir-154-P30  Pab-Mir-154-P31  Pab-Mir-154-P32  Pab-Mir-154-P33  Pab-Mir-154-P34 
Orthologues Cfa-Mir-154-P20  Cja-Mir-154-P20  Cpo-Mir-154-P20  Dno-Mir-154-P20  Eca-Mir-154-P20  Ete-Mir-154-P20  Hsa-Mir-154-P20  Laf-Mir-154-P20  Mml-Mir-154-P20  Mmr-Mir-154-P20  Ocu-Mir-154-P20 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054694.2: 105479902-105479960 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGAUGGCACAGUUCUUUGGUGCUUAAAGAAUGGCUGUCCGUAGUAUGGUCUCUAUAUUUAUGAUGAUUAAUAUCGGACAACCAUUGUUUUAGUAUCCAAAUUUGCUUCCGAAGUUUU
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Structure
        10         20         30        40        50         
CUUGAUGGCACAGUUCU-    -|   U   G     C      UAGUA     UCUAUA 
                  UUGG UGCU AAA AAUGG UGUCCG     UGGUC      U
                  AACC AUGA UUU UUACC ACAGGC     AUUAG      U
UUUUGAAGCCUUCGUUUA    U^   U   G     A      UAUA-     UAGUAU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Li Li
Star sequence

Pab-Mir-154-P20_5p* (predicted)
mirBase accessionNone
Sequence 
0- AAUGGCUGUCCGUAGUAUGGUC -22
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Mature sequence

Pab-Mir-154-P20_3p
mirBase accessionNone
Sequence 
38- UUAAUAUCGGACAACCAUUGU -59
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