MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-154-P10

Family name MIR-154 (all species)
Seed AGGUCAC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-154-P1  Pab-Mir-154-P2-v1  Pab-Mir-154-P2-v2  Pab-Mir-154-P3-v1  Pab-Mir-154-P3-v2  Pab-Mir-154-P4  Pab-Mir-154-P5  Pab-Mir-154-P6a-v1  Pab-Mir-154-P6a-v2  Pab-Mir-154-P6b  Pab-Mir-154-P7  Pab-Mir-154-P8a  Pab-Mir-154-P8b  Pab-Mir-154-P9  Pab-Mir-154-P11  Pab-Mir-154-P12  Pab-Mir-154-P14  Pab-Mir-154-P16a  Pab-Mir-154-P16b  Pab-Mir-154-P17  Pab-Mir-154-P18  Pab-Mir-154-P19  Pab-Mir-154-P20  Pab-Mir-154-P21  Pab-Mir-154-P23  Pab-Mir-154-P24  Pab-Mir-154-P25  Pab-Mir-154-P26  Pab-Mir-154-P28  Pab-Mir-154-P29  Pab-Mir-154-P30  Pab-Mir-154-P31  Pab-Mir-154-P32  Pab-Mir-154-P33  Pab-Mir-154-P34 
Orthologues Bta-Mir-154-P10  Cfa-Mir-154-P10  Cja-Mir-154-P10  Cpo-Mir-154-P10  Dno-Mir-154-P10  Eca-Mir-154-P10  Ete-Mir-154-P10  Hsa-Mir-154-P10  Laf-Mir-154-P10  Mml-Mir-154-P10  Mmr-Mir-154-P10  Mmu-Mir-154-P10-v1  Mmu-Mir-154-P10-v2  Rno-Mir-154-P10 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054694.2: 105461069-105461125 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCAUCUGCUCUCCAGGGUAGCUGAGGGGAUGGUAGACCGGUGACGUGCACUUCAUUUACGAUGUAGGUCACCCGUUUGACUAUCCACCAGCGCCCGGUCCAUCUGUGGGAUGACA
Get precursor sequence
Structure
        10           20        30         40        50       
UGCCAUCUGCUCUCCAG---| UA    AGG       -    C      G    CUUCA 
                    GG  GCUG   GGAUGGU AGAC GGUGAC UGCA     U
                    CC  CGAC   CCUAUCA UUUG CCACUG AUGU     U
ACAGUAGGGUGUCUACCUGG^ CG    CA-       G    C      G    AGCAU 
     110       100        90         80        70        60
Deep sequencing
3' NTU No
MotifsNo
Star sequence

Pab-Mir-154-P10_5p* (predicted)
mirBase accessionNone
Sequence 
0- AUGGUAGACCGGUGACGUGCA -21
Get sequence
Mature sequence

Pab-Mir-154-P10_3p (predicted)
mirBase accessionNone
Sequence 
35- UAGGUCACCCGUUUGACUAUCC -57
Get sequence