Mir-154-P2-v2

MirGeneDB ID

Pab-Mir-154-P2-v2

Family name

MIR-154 (all species)

Seed

UAGUAGA

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-154-P1 Pab-Mir-154-P2-v1 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Pab-Mir-154-P4 Pab-Mir-154-P5 Pab-Mir-154-P6a-v1 Pab-Mir-154-P6a-v2 Pab-Mir-154-P6b Pab-Mir-154-P7 Pab-Mir-154-P8a Pab-Mir-154-P8b Pab-Mir-154-P9 Pab-Mir-154-P10 Pab-Mir-154-P11 Pab-Mir-154-P12 Pab-Mir-154-P14 Pab-Mir-154-P16a Pab-Mir-154-P16b Pab-Mir-154-P17 Pab-Mir-154-P18 Pab-Mir-154-P19 Pab-Mir-154-P20 Pab-Mir-154-P21 Pab-Mir-154-P23 Pab-Mir-154-P24 Pab-Mir-154-P25 Pab-Mir-154-P26 Pab-Mir-154-P28 Pab-Mir-154-P29 Pab-Mir-154-P30 Pab-Mir-154-P31 Pab-Mir-154-P32 Pab-Mir-154-P33 Pab-Mir-154-P34

Orthologues

Bta-Mir-154-P2-v1 Bta-Mir-154-P2-v2 Cfa-Mir-154-P2-v1 Cfa-Mir-154-P2-v2 Cja-Mir-154-P2 Cpo-Mir-154-P2-v1 Cpo-Mir-154-P2-v2 Dno-Mir-154-P2-v1 Dno-Mir-154-P2-v2 Eca-Mir-154-P2-v1 Eca-Mir-154-P2-v2 Ete-Mir-154-P2-v1 Ete-Mir-154-P2-v2 Hsa-Mir-154-P2-v1 Hsa-Mir-154-P2-v2 Laf-Mir-154-P2 Mml-Mir-154-P2-v1 Mml-Mir-154-P2-v2 Mmr-Mir-154-P2-v1 Mmr-Mir-154-P2-v2 Mmu-Mir-154-P2-v1 Mmu-Mir-154-P2-v2 Ocu-Mir-154-P2-v1 Ocu-Mir-154-P2-v2 Rno-Mir-154-P2-v1 Rno-Mir-154-P2-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054694.2: 105454312-105454369 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUCGGCGUCUCUGUGUGGUACUUGGAGAGAUAGUAGACCGUAUAGCGUACGCUUUAUCUGUGACGUAUGUAACACGGUCCACUAACCCUCAGUAUCAAAUCCAUCCCCGAGGCUCCU

Get precursor sequence

Structure

        10            20        30        40        50        
CCUCGGCGUCUCUGUGU----|     UG   AGA    A      AUA       CUUUA 
                     GGUACU  GAG   UAGU GACCGU   GCGUACG     U
                     CUAUGA  CUC   AUCA CUGGCA   UGUAUGC     C
UCCUCGGAGCCCCUACCUAAA^     --   CCA    C      CAA       AGUGU 
      110       100          90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Mature sequence

Pab-Mir-154-P2-v2_5p

mirBase accession

None

Sequence

0- AUAGUAGACCGUAUAGCGUACG -22

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Star sequence

Pab-Mir-154-P2-v2_3p*

mirBase accession

None

Sequence

36- UAUGUAACACGGUCCACUAACC -58

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