MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-154-P8a

Family name MIR-154 (all species)
Seed ACACACC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-154-P1  Pab-Mir-154-P2-v1  Pab-Mir-154-P2-v2  Pab-Mir-154-P3-v1  Pab-Mir-154-P3-v2  Pab-Mir-154-P4  Pab-Mir-154-P5  Pab-Mir-154-P6a-v1  Pab-Mir-154-P6a-v2  Pab-Mir-154-P6b  Pab-Mir-154-P7  Pab-Mir-154-P8b  Pab-Mir-154-P9  Pab-Mir-154-P10  Pab-Mir-154-P11  Pab-Mir-154-P12  Pab-Mir-154-P14  Pab-Mir-154-P16a  Pab-Mir-154-P16b  Pab-Mir-154-P17  Pab-Mir-154-P18  Pab-Mir-154-P19  Pab-Mir-154-P20  Pab-Mir-154-P21  Pab-Mir-154-P23  Pab-Mir-154-P24  Pab-Mir-154-P25  Pab-Mir-154-P26  Pab-Mir-154-P28  Pab-Mir-154-P29  Pab-Mir-154-P30  Pab-Mir-154-P31  Pab-Mir-154-P32  Pab-Mir-154-P33  Pab-Mir-154-P34 
Orthologues Bta-Mir-154-P8a  Cfa-Mir-154-P8a  Cja-Mir-154-P8a  Cpo-Mir-154-P8-o1  Dno-Mir-154-P8a  Eca-Mir-154-P8a  Ete-Mir-154-P8a  Hsa-Mir-154-P8a  Laf-Mir-154-P8  Mml-Mir-154-P8a  Mmr-Mir-154-P8a  Mmu-Mir-154-P8-o1  Ocu-Mir-154-P8-o1  Rno-Mir-154-P8-o1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054694.2: 105457771-105457830 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGUCAGUGUUAAUCAGUGGUACCUGAAGAGAGGUUUUCUGGGUUUCUGUUUCUUUAAUGAGGAUGAAACACACCUGGUUAACCUCUUUUCCAGUAUCAAAUCCCAUCUUGGAGGCCUU
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Structure
        10          20        30        40        50        60
CUUGUCAGUGUUAAUCAG--|     CU           UU UG   UUC      UUUAA 
                    UGGUAC  GAAGAGAGGUU  C  GGU   UGUUUC     U
                    ACUAUG  CUUUUCUCCAA  G  CCA   ACAAAG     G
UUCCGGAGGUUCUACCCUAA^     AC           UU GU   C--      UAGGA 
.       110       100        90        80          70
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Li Li
Star sequence

Pab-Mir-154-P8a_5p*
mirBase accessionNone
Sequence 
0- AGAGGUUUUCUGGGUUUCUGUUUC -24
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Mature sequence

Pab-Mir-154-P8a_3p
mirBase accessionNone
Sequence 
38- AACACACCUGGUUAACCUCUUU -60
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