MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-154-P29

Family name MIR-154 (all species)
Seed UCACACA
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-154-P1  Pab-Mir-154-P2-v1  Pab-Mir-154-P2-v2  Pab-Mir-154-P3-v1  Pab-Mir-154-P3-v2  Pab-Mir-154-P4  Pab-Mir-154-P5  Pab-Mir-154-P6a-v1  Pab-Mir-154-P6a-v2  Pab-Mir-154-P6b  Pab-Mir-154-P7  Pab-Mir-154-P8a  Pab-Mir-154-P8b  Pab-Mir-154-P9  Pab-Mir-154-P10  Pab-Mir-154-P11  Pab-Mir-154-P12  Pab-Mir-154-P14  Pab-Mir-154-P16a  Pab-Mir-154-P16b  Pab-Mir-154-P17  Pab-Mir-154-P18  Pab-Mir-154-P19  Pab-Mir-154-P20  Pab-Mir-154-P21  Pab-Mir-154-P23  Pab-Mir-154-P24  Pab-Mir-154-P25  Pab-Mir-154-P26  Pab-Mir-154-P28  Pab-Mir-154-P30  Pab-Mir-154-P31  Pab-Mir-154-P32  Pab-Mir-154-P33  Pab-Mir-154-P34 
Orthologues Bta-Mir-154-P29  Cfa-Mir-154-P29  Cja-Mir-154-P29  Cpo-Mir-154-P29  Dno-Mir-154-P29  Eca-Mir-154-P29  Ete-Mir-154-P29  Hsa-Mir-154-P29  Laf-Mir-154-P29  Mml-Mir-154-P29  Mmr-Mir-154-P29  Mmu-Mir-154-P29  Ocu-Mir-154-P29  Rno-Mir-154-P29 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054694.2: 105494088-105494147 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGCCCGUGCUGACGUUUGACCCUUGAGCAGAGGUUGCCCUUGGUGAAUUCGCUUUAUUUAUGUUGAAUCACACAAAGGCAACUUUUGUUUGAGUAUCAAAUCCUGCUUGGGAUGGCUU
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Structure
        10          20        30        40         50         
CUUGCCCGUGCUGACGU--    CC  UG             C   -|   A   GCUUUA 
                   UUGA  CU  AGCAGAGGUUGCC UUG GUGA UUC      U
                   AACU  GA  UUGUUUUCAACGG AAC CACU AAG      U
UUCGGUAGGGUUCGUCCUA    AU  GU             A   A^   -   UUGUAU 
.       110       100        90        80        70         60
Deep sequencing
3' NTU No
MotifsNo
Star sequence

Pab-Mir-154-P29_5p*
mirBase accessionNone
Sequence 
0- AGAGGUUGCCCUUGGUGAAUUC -22
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Mature sequence

Pab-Mir-154-P29_3p
mirBase accessionNone
Sequence 
38- AUCACACAAAGGCAACUUUUGU -60
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