Mir-154-P29

MirGeneDB ID

Pab-Mir-154-P29

Family name

MIR-154 (all species)

Seed

UCACACA

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-154-P1 Pab-Mir-154-P2-v1 Pab-Mir-154-P2-v2 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Pab-Mir-154-P4 Pab-Mir-154-P5 Pab-Mir-154-P6a-v1 Pab-Mir-154-P6a-v2 Pab-Mir-154-P6b Pab-Mir-154-P7 Pab-Mir-154-P8a Pab-Mir-154-P8b Pab-Mir-154-P9 Pab-Mir-154-P10 Pab-Mir-154-P11 Pab-Mir-154-P12 Pab-Mir-154-P14 Pab-Mir-154-P16a Pab-Mir-154-P16b Pab-Mir-154-P17 Pab-Mir-154-P18 Pab-Mir-154-P19 Pab-Mir-154-P20 Pab-Mir-154-P21 Pab-Mir-154-P23 Pab-Mir-154-P24 Pab-Mir-154-P25 Pab-Mir-154-P26 Pab-Mir-154-P28 Pab-Mir-154-P30 Pab-Mir-154-P31 Pab-Mir-154-P32 Pab-Mir-154-P33 Pab-Mir-154-P34

Orthologues

Bta-Mir-154-P29 Cfa-Mir-154-P29 Cja-Mir-154-P29 Cpo-Mir-154-P29 Dno-Mir-154-P29 Eca-Mir-154-P29 Ete-Mir-154-P29 Hsa-Mir-154-P29 Laf-Mir-154-P29 Mml-Mir-154-P29 Mmr-Mir-154-P29 Mmu-Mir-154-P29 Ocu-Mir-154-P29 Rno-Mir-154-P29

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054694.2: 105494088-105494147 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUUGCCCGUGCUGACGUUUGACCCUUGAGCAGAGGUUGCCCUUGGUGAAUUCGCUUUAUUUAUGUUGAAUCACACAAAGGCAACUUUUGUUUGAGUAUCAAAUCCUGCUUGGGAUGGCUU

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Structure

        10          20        30        40         50         
CUUGCCCGUGCUGACGU--    CC  UG             C   -|   A   GCUUUA 
                   UUGA  CU  AGCAGAGGUUGCC UUG GUGA UUC      U
                   AACU  GA  UUGUUUUCAACGG AAC CACU AAG      U
UUCGGUAGGGUUCGUCCUA    AU  GU             A   A^   -   UUGUAU 
.       110       100        90        80        70         60

Deep sequencing

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3' NTU

Motifs

Tissue expression

Br	Br	Li	Li

Star sequence

Pab-Mir-154-P29_5p*

mirBase accession

None

Sequence

0- AGAGGUUGCCCUUGGUGAAUUC -22

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Mature sequence

Pab-Mir-154-P29_3p

mirBase accession

None

Sequence

38- AUCACACAAAGGCAACUUUUGU -60

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