Mir-154-P25

MirGeneDB ID

Pab-Mir-154-P25

Family name

MIR-154 (all species)

Seed

GAGGCUG

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-154-P1 Pab-Mir-154-P2-v1 Pab-Mir-154-P2-v2 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Pab-Mir-154-P4 Pab-Mir-154-P5 Pab-Mir-154-P6a-v1 Pab-Mir-154-P6a-v2 Pab-Mir-154-P6b Pab-Mir-154-P7 Pab-Mir-154-P8a Pab-Mir-154-P8b Pab-Mir-154-P9 Pab-Mir-154-P10 Pab-Mir-154-P11 Pab-Mir-154-P12 Pab-Mir-154-P14 Pab-Mir-154-P16a Pab-Mir-154-P16b Pab-Mir-154-P17 Pab-Mir-154-P18 Pab-Mir-154-P19 Pab-Mir-154-P20 Pab-Mir-154-P21 Pab-Mir-154-P23 Pab-Mir-154-P24 Pab-Mir-154-P26 Pab-Mir-154-P28 Pab-Mir-154-P29 Pab-Mir-154-P30 Pab-Mir-154-P31 Pab-Mir-154-P32 Pab-Mir-154-P33 Pab-Mir-154-P34

Orthologues

Bta-Mir-154-P25 Cfa-Mir-154-P25 Cja-Mir-154-P25 Dno-Mir-154-P25 Eca-Mir-154-P25 Hsa-Mir-154-P25 Laf-Mir-154-P25 Mml-Mir-154-P25 Mmr-Mir-154-P25 Mmu-Mir-154-P25 Ocu-Mir-154-P25 Rno-Mir-154-P25

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054694.2: 105487426-105487484 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCACCAGUGUUCAUGUGUGGUACUUGGAGAGAGGCUGGCCGUGAUGAAUUCGAUUCAUCAAAGCGAGUCAUACACGGCUCUCCUCUCUUUUAGUGUCAAAUUCUGCCUCAGAGGGCUU

Get precursor sequence

Structure

        10          20        30        40         50         
CUCACCAGUGUUCAUGUG--  GU   UG        CU       -|   A    AUUCA 
                    UG  ACU  GAGAGAGG  GGCCGUG AUGA UUCG     \
                    AC  UGA  UUCUCUCC  UCGGCAC UACU GAGC     U
UUCGGGAGACUCCGUCUUAA  UG   UU        UC       A^   -    GAAAC 
       110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Mature sequence

Pab-Mir-154-P25_5p

mirBase accession

None

Sequence

0- AGAGGCUGGCCGUGAUGAAUUCG -23

Get sequence

Star sequence

Pab-Mir-154-P25_3p*

mirBase accession

None

Sequence

37- GUCAUACACGGCUCUCCUCUCU -59

Get sequence