MirGeneDB ID | Pab-Mir-154-P25 |
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Family name | MIR-154 (all species) |
Seed | GAGGCUG |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-154-P1 Pab-Mir-154-P2-v1 Pab-Mir-154-P2-v2 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Pab-Mir-154-P4 Pab-Mir-154-P5 Pab-Mir-154-P6a-v1 Pab-Mir-154-P6a-v2 Pab-Mir-154-P6b Pab-Mir-154-P7 Pab-Mir-154-P8a Pab-Mir-154-P8b Pab-Mir-154-P9 Pab-Mir-154-P10 Pab-Mir-154-P11 Pab-Mir-154-P12 Pab-Mir-154-P14 Pab-Mir-154-P16a Pab-Mir-154-P16b Pab-Mir-154-P17 Pab-Mir-154-P18 Pab-Mir-154-P19 Pab-Mir-154-P20 Pab-Mir-154-P21 Pab-Mir-154-P23 Pab-Mir-154-P24 Pab-Mir-154-P26 Pab-Mir-154-P28 Pab-Mir-154-P29 Pab-Mir-154-P30 Pab-Mir-154-P31 Pab-Mir-154-P32 Pab-Mir-154-P33 Pab-Mir-154-P34 |
Orthologues | Bta-Mir-154-P25 Cfa-Mir-154-P25 Cja-Mir-154-P25 Dno-Mir-154-P25 Eca-Mir-154-P25 Hsa-Mir-154-P25 Laf-Mir-154-P25 Mml-Mir-154-P25 Mmr-Mir-154-P25 Mmu-Mir-154-P25 Ocu-Mir-154-P25 Rno-Mir-154-P25 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054694.2: 105487426-105487484 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CUCACCAGUGUUCAUGUGUGGUACUUGGAGAGAGGCUGGCCGUGAUGAAUUCGAUUCAUCAAAGCGAGUCAUACACGGCUCUCCUCUCUUUUAGUGUCAAAUUCUGCCUCAGAGGGCUUGet precursor sequence |
Structure | 10 20 30 40 50 CUCACCAGUGUUCAUGUG-- GU UG CU -| A AUUCA UG ACU GAGAGAGG GGCCGUG AUGA UUCG \ AC UGA UUCUCUCC UCGGCAC UACU GAGC U UUCGGGAGACUCCGUCUUAA UG UU UC A^ - GAAAC 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Mature sequence | Pab-Mir-154-P25_5p |
mirBase accession | None |
Sequence |
0- AGAGGCUGGCCGUGAUGAAUUCG -23
Get sequence
|
Star sequence | Pab-Mir-154-P25_3p* |
mirBase accession | None |
Sequence |
37- GUCAUACACGGCUCUCCUCUCU -59
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|