MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-154-P25

Family name MIR-154 (all species)
Seed GAGGCUG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-154-P1  Cja-Mir-154-P2  Cja-Mir-154-P3  Cja-Mir-154-P4  Cja-Mir-154-P5  Cja-Mir-154-P6a  Cja-Mir-154-P6b  Cja-Mir-154-P7  Cja-Mir-154-P8a  Cja-Mir-154-P9  Cja-Mir-154-P10  Cja-Mir-154-P11  Cja-Mir-154-P12  Cja-Mir-154-P14  Cja-Mir-154-P16a  Cja-Mir-154-P16b  Cja-Mir-154-P17  Cja-Mir-154-P18  Cja-Mir-154-P19  Cja-Mir-154-P20  Cja-Mir-154-P21  Cja-Mir-154-P22  Cja-Mir-154-P23  Cja-Mir-154-P24  Cja-Mir-154-P26  Cja-Mir-154-P28  Cja-Mir-154-P29  Cja-Mir-154-P30  Cja-Mir-154-P31  Cja-Mir-154-P32  Cja-Mir-154-P33  Cja-Mir-154-P34 
Orthologues Bta-Mir-154-P25  Cfa-Mir-154-P25  Dno-Mir-154-P25  Eca-Mir-154-P25  Hsa-Mir-154-P25  Laf-Mir-154-P25  Mml-Mir-154-P25  Mmr-Mir-154-P25  Mmu-Mir-154-P25  Ocu-Mir-154-P25  Pab-Mir-154-P25  Rno-Mir-154-P25 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 131869829-131869887 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUCACCAGUGCUCACUAUGGUACUUGGAGAGAGGCUGGCCGUGAUGAAUUCGAUCCUUCAAAGCGAGUCAUACACGGCUCUCCUCUCUUUUAGUGUCAGAUUCUGCCUCGGAGGGCUU
Get precursor sequence
Structure
        10          20        30        40         50         
UCUCACCAGUGCUCACUA--  GU   UG        CU       -|   A    AUCCU 
                    UG  ACU  GAGAGAGG  GGCCGUG AUGA UUCG     \
                    AC  UGA  UUCUCUCC  UCGGCAC UACU GAGC     U
UUCGGGAGGCUCCGUCUUAG  UG   UU        UC       A^   -    GAAAC 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cja-Mir-154-P25_5p (predicted)
mirBase accessionNone
Sequence 
0- AGAGGCUGGCCGUGAUGAAUUCG -23
Get sequence
Star sequence

Cja-Mir-154-P25_3p* (predicted)
mirBase accessionNone
Sequence 
37- GUCAUACACGGCUCUCCUCUCU -59
Get sequence