MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-154-P31

Family name MIR-154 (all species)
Seed GGUCGAC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-154-P1  Cja-Mir-154-P2  Cja-Mir-154-P3  Cja-Mir-154-P4  Cja-Mir-154-P5  Cja-Mir-154-P6a  Cja-Mir-154-P6b  Cja-Mir-154-P7  Cja-Mir-154-P8a  Cja-Mir-154-P9  Cja-Mir-154-P10  Cja-Mir-154-P11  Cja-Mir-154-P12  Cja-Mir-154-P14  Cja-Mir-154-P16a  Cja-Mir-154-P16b  Cja-Mir-154-P17  Cja-Mir-154-P18  Cja-Mir-154-P19  Cja-Mir-154-P20  Cja-Mir-154-P21  Cja-Mir-154-P22  Cja-Mir-154-P23  Cja-Mir-154-P24  Cja-Mir-154-P25  Cja-Mir-154-P26  Cja-Mir-154-P28  Cja-Mir-154-P29  Cja-Mir-154-P30  Cja-Mir-154-P32  Cja-Mir-154-P33  Cja-Mir-154-P34 
Orthologues Bta-Mir-154-P31  Cfa-Mir-154-P31  Cpo-Mir-154-P31  Dno-Mir-154-P31  Eca-Mir-154-P31  Ete-Mir-154-P31  Hsa-Mir-154-P31  Laf-Mir-154-P31  Mml-Mir-154-P31  Mmr-Mir-154-P31  Mmu-Mir-154-P31  Pab-Mir-154-P31  Rno-Mir-154-P31 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 131880354-131880408 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUCAGCACCGUUCUGGGGUAGGGGAUGGAUGGUCGACCAGUUGGAAAGUAAUUGUUUCUAAUGUACUUCACCUGGUCCACUAGCCGUCCGUACCCGCUGCAGCCCGCGGGGCCU
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Structure
        10        20        30            40        50        
CAUCAGCACCGUUCUGGGGUA   G         C----|     U   AA    AUUGUU 
                     GGG AUGGAUGGU     GACCAG UGG  AGUA      \
                     CCC UGCCUGCCG     CUGGUC ACU  UCAU      U
UCCGGGGCGCCCGACGUCG--   A         AUCAC^     C   --    GUAAUC 
   110       100          90        80        70          60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Cja-Mir-154-P31_5p (predicted)
mirBase accessionNone
Sequence 
0- UGGUCGACCAGUUGGAAAGUAAU -23
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Star sequence

Cja-Mir-154-P31_3p* (predicted)
mirBase accessionNone
Sequence 
34- UACUUCACCUGGUCCACUAGC -55
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