| MirGeneDB ID | Cja-Mir-154-P31 |
|---|---|
| Family name | MIR-154 (all species) |
| Seed | GGUCGAC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-154-P1 Cja-Mir-154-P2 Cja-Mir-154-P3 Cja-Mir-154-P4 Cja-Mir-154-P5 Cja-Mir-154-P6a Cja-Mir-154-P6b Cja-Mir-154-P7 Cja-Mir-154-P8a Cja-Mir-154-P9 Cja-Mir-154-P10 Cja-Mir-154-P11 Cja-Mir-154-P12 Cja-Mir-154-P14 Cja-Mir-154-P16a Cja-Mir-154-P16b Cja-Mir-154-P17 Cja-Mir-154-P18 Cja-Mir-154-P19 Cja-Mir-154-P20 Cja-Mir-154-P21 Cja-Mir-154-P22 Cja-Mir-154-P23 Cja-Mir-154-P24 Cja-Mir-154-P25 Cja-Mir-154-P26 Cja-Mir-154-P28 Cja-Mir-154-P29 Cja-Mir-154-P30 Cja-Mir-154-P32 Cja-Mir-154-P33 Cja-Mir-154-P34 |
| Orthologues | Bta-Mir-154-P31 Cfa-Mir-154-P31 Cpo-Mir-154-P31 Dno-Mir-154-P31 Eca-Mir-154-P31 Ete-Mir-154-P31 Hsa-Mir-154-P31 Laf-Mir-154-P31 Mml-Mir-154-P31 Mmr-Mir-154-P31 Mmu-Mir-154-P31 Pab-Mir-154-P31 Rno-Mir-154-P31 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021924.1: 131880354-131880408 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CAUCAGCACCGUUCUGGGGUAGGGGAUGGAUGGUCGACCAGUUGGAAAGUAAUUGUUUCUAAUGUACUUCACCUGGUCCACUAGCCGUCCGUACCCGCUGCAGCCCGCGGGGCCUGet precursor sequence |
| Structure | 10 20 30 40 50 CAUCAGCACCGUUCUGGGGUA G C----| U AA AUUGUU GGG AUGGAUGGU GACCAG UGG AGUA \ CCC UGCCUGCCG CUGGUC ACU UCAU U UCCGGGGCGCCCGACGUCG-- A AUCAC^ C -- GUAAUC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Cja-Mir-154-P31_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGGUCGACCAGUUGGAAAGUAAU -23
Get sequence
|
| Star sequence | Cja-Mir-154-P31_3p* (predicted) |
| mirBase accession | None |
| Sequence |
34- UACUUCACCUGGUCCACUAGC -55
Get sequence
|
