MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-154-P8a

Family name MIR-154 (all species)
Seed ACACACC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-154-P1  Cja-Mir-154-P2  Cja-Mir-154-P3  Cja-Mir-154-P4  Cja-Mir-154-P5  Cja-Mir-154-P6a  Cja-Mir-154-P6b  Cja-Mir-154-P7  Cja-Mir-154-P9  Cja-Mir-154-P10  Cja-Mir-154-P11  Cja-Mir-154-P12  Cja-Mir-154-P14  Cja-Mir-154-P16a  Cja-Mir-154-P16b  Cja-Mir-154-P17  Cja-Mir-154-P18  Cja-Mir-154-P19  Cja-Mir-154-P20  Cja-Mir-154-P21  Cja-Mir-154-P22  Cja-Mir-154-P23  Cja-Mir-154-P24  Cja-Mir-154-P25  Cja-Mir-154-P26  Cja-Mir-154-P28  Cja-Mir-154-P29  Cja-Mir-154-P30  Cja-Mir-154-P31  Cja-Mir-154-P32  Cja-Mir-154-P33  Cja-Mir-154-P34 
Orthologues Bta-Mir-154-P8a  Cfa-Mir-154-P8a  Cpo-Mir-154-P8-o1  Dno-Mir-154-P8a  Eca-Mir-154-P8a  Ete-Mir-154-P8a  Hsa-Mir-154-P8a  Laf-Mir-154-P8  Mml-Mir-154-P8a  Mmr-Mir-154-P8a  Mmu-Mir-154-P8-o1  Ocu-Mir-154-P8-o1  Pab-Mir-154-P8a  Rno-Mir-154-P8-o1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 131839579-131839638 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGUCAGUGUCACUUUGUGGUACCUGAAGAGAGGUUUUCUGGGGUUCUGUUUCUUUAAUGAGGAUGAAACACACCUGGUUAACCUCUUUUCCAGUAUCAAAUCCCAUCUUGGAGGCCUC
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Structure
        10          20        30        40        50        60
CUUGUCAGUGUCACUUUG--|     CU           UU UG  GUUC      UUUAA 
                    UGGUAC  GAAGAGAGGUU  C  GG    UGUUUC     U
                    ACUAUG  CUUUUCUCCAA  G  CC    ACAAAG     G
CUCCGGAGGUUCUACCCUAA^     AC           UU GU  AC--      UAGGA 
.       110       100        90        80          70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-154-P8a_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGAGGUUUUCUGGGGUUCUGUUUC -24
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Mature sequence

Cja-Mir-154-P8a_3p (predicted)
mirBase accessionNone
Sequence 
38- AACACACCUGGUUAACCUCUUU -60
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