Mir-154-P8-o1

MirGeneDB ID

Rno-Mir-154-P8-o1

Family name

MIR-154 (all species)

Seed

GAGGUUU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-329

Paralogues

Rno-Mir-154-P1 Rno-Mir-154-P2-v1 Rno-Mir-154-P2-v2 Rno-Mir-154-P3-v1 Rno-Mir-154-P3-v2 Rno-Mir-154-P4 Rno-Mir-154-P6a-v1 Rno-Mir-154-P6a-v2 Rno-Mir-154-P7 Rno-Mir-154-P9 Rno-Mir-154-P10 Rno-Mir-154-P11 Rno-Mir-154-P12 Rno-Mir-154-P15 Rno-Mir-154-P17 Rno-Mir-154-P18 Rno-Mir-154-P19 Rno-Mir-154-P24 Rno-Mir-154-P25 Rno-Mir-154-P26 Rno-Mir-154-P28-v1 Rno-Mir-154-P28-v2 Rno-Mir-154-P29 Rno-Mir-154-P30 Rno-Mir-154-P31 Rno-Mir-154-P32 Rno-Mir-154-P33

Orthologues

Bta-Mir-154-P8a Bta-Mir-154-P8b Cfa-Mir-154-P8a Cfa-Mir-154-P8b Cja-Mir-154-P8a Cpo-Mir-154-P8-o1 Dno-Mir-154-P8a Dno-Mir-154-P8b Eca-Mir-154-P8a Eca-Mir-154-P8b Ete-Mir-154-P8a Ete-Mir-154-P8b Hsa-Mir-154-P8a Hsa-Mir-154-P8b Laf-Mir-154-P8 Mml-Mir-154-P8a Mml-Mir-154-P8b Mmr-Mir-154-P8a Mmr-Mir-154-P8b Mmu-Mir-154-P8-o1 Ocu-Mir-154-P8-o1 Pab-Mir-154-P8a Pab-Mir-154-P8b

Node of Origin (locus)

Glires

Node of Origin (family)

Eutheria

Genome context
(rn6)

chr6: 133862190-133862249 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P8-o1)

Mir-154-P1 chr6: 133857715-133857772 [+] UCSC Ensembl
Mir-154-P2-v2 chr6: 133858858-133858915 [+] UCSC Ensembl
Mir-154-P2-v1 chr6: 133858859-133858914 [+] UCSC Ensembl
Mir-154-P3-v1 chr6: 133859329-133859383 [+] UCSC Ensembl
Mir-154-P3-v2 chr6: 133859330-133859382 [+] UCSC Ensembl
Mir-154-P4 chr6: 133860500-133860556 [+] UCSC Ensembl
Mir-154-P6a-v1 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P6a-v2 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P7 chr6: 133861509-133861566 [+] UCSC Ensembl
Mir-154-P8-o1 chr6: 133862190-133862249 [+] UCSC Ensembl
Mir-154-P9 chr6: 133864385-133864440 [+] UCSC Ensembl
Mir-154-P10 chr6: 133864729-133864785 [+] UCSC Ensembl
Mir-666 chr6: 133866541-133866601 [+] UCSC Ensembl
Mir-154-P11 chr6: 133866672-133866729 [+] UCSC Ensembl
Mir-154-P12 chr6: 133868298-133868357 [+] UCSC Ensembl
Mir-667 chr6: 133869584-133869647 [+] UCSC Ensembl
Mir-376-P2 chr6: 133872453-133872510 [+] UCSC Ensembl
Mir-376-P4 chr6: 133873110-133873167 [+] UCSC Ensembl
Mir-376-P5 chr6: 133873618-133873675 [+] UCSC Ensembl
Mir-154-P15 chr6: 133874161-133874223 [+] UCSC Ensembl
Mir-154-P17 chr6: 133876615-133876677 [+] UCSC Ensembl
Mir-154-P18 chr6: 133877137-133877194 [+] UCSC Ensembl
Mir-154-P19 chr6: 133877840-133877901 [+] UCSC Ensembl
Mir-544 chr6: 133879179-133879235 [+] UCSC Ensembl
Mir-154-P24 chr6: 133884190-133884247 [+] UCSC Ensembl
Mir-134 chr6: 133884554-133884614 [+] UCSC Ensembl
Mir-154-P25 chr6: 133885310-133885368 [+] UCSC Ensembl
Mir-154-P26 chr6: 133888600-133888657 [+] UCSC Ensembl
Mir-154-P28-v2 chr6: 133889296-133889351 [+] UCSC Ensembl
Mir-154-P28-v1 chr6: 133889297-133889350 [+] UCSC Ensembl
Mir-154-P29 chr6: 133890697-133890756 [+] UCSC Ensembl
Mir-541 chr6: 133892668-133892733 [+] UCSC Ensembl
Mir-154-P30 chr6: 133893432-133893485 [+] UCSC Ensembl
Mir-154-P31 chr6: 133893579-133893634 [+] UCSC Ensembl
Mir-154-P32 chr6: 133893706-133893761 [+] UCSC Ensembl
Mir-154-P33 chr6: 133894007-133894062 [+] UCSC Ensembl
Mir-3072 chr6: 133898823-133898879 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUUGUCAGUGUUCGCUUCUGGUACCGGAAGAGAGGUUUUCUGGGUCUCUGUUUCUUUGAUGAGAAUGAAACACACCCAGCUAACCUUUUUUUCAGUAUCAAAUCCCAUCUUGGAGGCUUC

Get precursor sequence

Structure

        10          20        30        40        50        60
CUUGUCAGUGUUCGCUUC--|     C            UU      CUC     CUUUGA 
                    UGGUAC GGAAGAGAGGUU  CUGGGU   UGUUU      U
                    ACUAUG CUUUUUUUCCAA  GACCCA   ACAAA      G
CUUCGGAGGUUCUACCCUAA^     A            UC      C--     GUAAGA 
.       110       100        90        80          70

Deep sequencing

Go to detailed chart

Comment

The murids are arm switched realtive to other mammals.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-154-P8-o1_5p

mirBase accession

MIMAT0017031

Sequence

0- AGAGGUUUUCUGGGUCUCUGUUU -23

Get sequence

Proposed targets

TargetScanVert: rno-miR-329-5p
miRDB: MIMAT0017031

Star sequence

Rno-Mir-154-P8-o1_3p*

mirBase accession

MIMAT0000566

Sequence

38- AACACACCCAGCUAACCUUUUU -60

Get sequence

Proposed targets

microrna.org: MIMAT0000566
TargetScanVert: rno-miR-329-3p
miRDB: MIMAT0000566