| MirGeneDB ID | Pab-Mir-154-P8b |
|---|---|
| Family name | MIR-154 (all species) |
| Seed | ACACACC |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-154-P1 Pab-Mir-154-P2-v1 Pab-Mir-154-P2-v2 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Pab-Mir-154-P4 Pab-Mir-154-P5 Pab-Mir-154-P6a-v1 Pab-Mir-154-P6a-v2 Pab-Mir-154-P6b Pab-Mir-154-P7 Pab-Mir-154-P8a Pab-Mir-154-P9 Pab-Mir-154-P10 Pab-Mir-154-P11 Pab-Mir-154-P12 Pab-Mir-154-P14 Pab-Mir-154-P16a Pab-Mir-154-P16b Pab-Mir-154-P17 Pab-Mir-154-P18 Pab-Mir-154-P19 Pab-Mir-154-P20 Pab-Mir-154-P21 Pab-Mir-154-P23 Pab-Mir-154-P24 Pab-Mir-154-P25 Pab-Mir-154-P26 Pab-Mir-154-P28 Pab-Mir-154-P29 Pab-Mir-154-P30 Pab-Mir-154-P31 Pab-Mir-154-P32 Pab-Mir-154-P33 Pab-Mir-154-P34 |
| Orthologues | Bta-Mir-154-P8b Cfa-Mir-154-P8b Cpo-Mir-154-P8-o1 Dno-Mir-154-P8b Eca-Mir-154-P8b Ete-Mir-154-P8b Hsa-Mir-154-P8b Laf-Mir-154-P8 Mml-Mir-154-P8b Mmr-Mir-154-P8b Mmu-Mir-154-P8-o1 Ocu-Mir-154-P8-o1 Rno-Mir-154-P8-o1 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054694.2: 105458088-105458147 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CUUGUCAGUGUCACUUGGUGGUACCUGAAGAGAGGUUUUCUGGGUUUCUGUUUCUUUAUUGAGGAUGAAACACACCUGGUUAACCUCUUUUCCAGUAUCAGUCCCCACCUUGGAGGCCUUGet precursor sequence |
| Structure | 10 20 30 40 50 60 CUUGUCAGUGUCACUUGG--| CU UU UG UUC UUUAU UGGUAC GAAGAGAGGUU C GGU UGUUUC U ACUAUG CUUUUCUCCAA G CCA ACAAAG G UUCCGGAGGUUCCACCCCUG^ AC UU GU C-- UAGGA . 110 100 90 80 70 |
| Deep sequencing | |
| Comment | There is a second Drosha cut +1 on both arms. |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Pab-Mir-154-P8b_5p* |
| mirBase accession | None |
| Sequence |
0- AGAGGUUUUCUGGGUUUCUGUUUC -24
Get sequence
|
| Mature sequence | Pab-Mir-154-P8b_3p |
| mirBase accession | None |
| Sequence |
38- AACACACCUGGUUAACCUCUUU -60
Get sequence
|
