Mir-154-P1

MirGeneDB ID

Pab-Mir-154-P1

Family name

MIR-154 (all species)

Seed

GGUAGAC

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-154-P2-v1 Pab-Mir-154-P2-v2 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Pab-Mir-154-P4 Pab-Mir-154-P5 Pab-Mir-154-P6a-v1 Pab-Mir-154-P6a-v2 Pab-Mir-154-P6b Pab-Mir-154-P7 Pab-Mir-154-P8a Pab-Mir-154-P8b Pab-Mir-154-P9 Pab-Mir-154-P10 Pab-Mir-154-P11 Pab-Mir-154-P12 Pab-Mir-154-P14 Pab-Mir-154-P16a Pab-Mir-154-P16b Pab-Mir-154-P17 Pab-Mir-154-P18 Pab-Mir-154-P19 Pab-Mir-154-P20 Pab-Mir-154-P21 Pab-Mir-154-P23 Pab-Mir-154-P24 Pab-Mir-154-P25 Pab-Mir-154-P26 Pab-Mir-154-P28 Pab-Mir-154-P29 Pab-Mir-154-P30 Pab-Mir-154-P31 Pab-Mir-154-P32 Pab-Mir-154-P33 Pab-Mir-154-P34

Orthologues

Bta-Mir-154-P1 Cfa-Mir-154-P1 Cja-Mir-154-P1 Cpo-Mir-154-P1 Dno-Mir-154-P1 Eca-Mir-154-P1 Ete-Mir-154-P1 Hsa-Mir-154-P1 Laf-Mir-154-P1 Mml-Mir-154-P1 Mmr-Mir-154-P1 Mmu-Mir-154-P1 Ocu-Mir-154-P1 Rno-Mir-154-P1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054694.2: 105453044-105453102 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUCAGCACCAUUCCAUGGUUCCUGAAGAGAUGGUAGACUAUGGAACGUAGGCGUUAUGAUUUUUGACCUAUGUAACAUGGUCCACUAACUCUCAGUAUCCAAUCCAUCCUCGGAGGGCU

Get precursor sequence

Structure

        10        20           30        40        50         
GUCAGCACCAUUCCAUGGUUC---|   A   A    A       GA       CGUUAUG 
                        CUGA GAG UGGU GACUAUG  ACGUAGG       \
                        GACU CUC AUCA CUGGUAC  UGUAUCC       A
UCGGGAGGCUCCUACCUAACCUAU^   -   A    C       AA       AGUUUUU 
       110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Mature sequence

Pab-Mir-154-P1_5p

mirBase accession

None

Sequence

0- UGGUAGACUAUGGAACGUAGG -21

Get sequence

Star sequence

Pab-Mir-154-P1_3p*

mirBase accession

None

Sequence

38- UAUGUAACAUGGUCCACUAAC -59

Get sequence