Mir-154-P9

MirGeneDB ID

Pab-Mir-154-P9

Family name

MIR-154 (all species)

Seed

GAAACAU

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-154-P1 Pab-Mir-154-P2-v1 Pab-Mir-154-P2-v2 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Pab-Mir-154-P4 Pab-Mir-154-P5 Pab-Mir-154-P6a-v1 Pab-Mir-154-P6a-v2 Pab-Mir-154-P6b Pab-Mir-154-P7 Pab-Mir-154-P8a Pab-Mir-154-P8b Pab-Mir-154-P10 Pab-Mir-154-P11 Pab-Mir-154-P12 Pab-Mir-154-P14 Pab-Mir-154-P16a Pab-Mir-154-P16b Pab-Mir-154-P17 Pab-Mir-154-P18 Pab-Mir-154-P19 Pab-Mir-154-P20 Pab-Mir-154-P21 Pab-Mir-154-P23 Pab-Mir-154-P24 Pab-Mir-154-P25 Pab-Mir-154-P26 Pab-Mir-154-P28 Pab-Mir-154-P29 Pab-Mir-154-P30 Pab-Mir-154-P31 Pab-Mir-154-P32 Pab-Mir-154-P33 Pab-Mir-154-P34

Orthologues

Bta-Mir-154-P9 Cfa-Mir-154-P9 Cja-Mir-154-P9 Cpo-Mir-154-P9 Dno-Mir-154-P9 Eca-Mir-154-P9 Ete-Mir-154-P9 Hsa-Mir-154-P9 Laf-Mir-154-P9 Mml-Mir-154-P9 Mmr-Mir-154-P9 Mmu-Mir-154-P9 Rno-Mir-154-P9

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054694.2: 105460648-105460703 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUCAGUGCUAAUCUUCGAUACUCGAAGGAGAGGUUGUCCGUGUUGUCUUCUCUUUAUUUAUGAUGAAACAUACACGGGAAACCUCUUUUUUAGUAUCAAAUCCCACCCUGGAGGCA

Get precursor sequence

Structure

        10           20        30        40         50        
AUCAGUGCUAAUCUUCG---|    C            GU      -   C   -  UUUA 
                    AUACU GAAGGAGAGGUU  CCGUGU UGU UUC UC    \
                    UAUGA UUUUUUCUCCAA  GGCACA ACA AAG AG    U
ACGGAGGUCCCACCCUAAAC^    -            AG      U   -   U  UAUU 
    110       100         90        80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Star sequence

Pab-Mir-154-P9_5p* (predicted)

mirBase accession

None

Sequence

0- AGGUUGUCCGUGUUGUCUUCUCU -23

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Mature sequence

Pab-Mir-154-P9_3p

mirBase accession

None

Sequence

33- UGAAACAUACACGGGAAACCUCU -56

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