Mir-154-P19

MirGeneDB ID

Pab-Mir-154-P19

Family name

MIR-154 (all species)

Seed

UCAUACA

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-154-P1 Pab-Mir-154-P2-v1 Pab-Mir-154-P2-v2 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Pab-Mir-154-P4 Pab-Mir-154-P5 Pab-Mir-154-P6a-v1 Pab-Mir-154-P6a-v2 Pab-Mir-154-P6b Pab-Mir-154-P7 Pab-Mir-154-P8a Pab-Mir-154-P8b Pab-Mir-154-P9 Pab-Mir-154-P10 Pab-Mir-154-P11 Pab-Mir-154-P12 Pab-Mir-154-P14 Pab-Mir-154-P16a Pab-Mir-154-P16b Pab-Mir-154-P17 Pab-Mir-154-P18 Pab-Mir-154-P20 Pab-Mir-154-P21 Pab-Mir-154-P23 Pab-Mir-154-P24 Pab-Mir-154-P25 Pab-Mir-154-P26 Pab-Mir-154-P28 Pab-Mir-154-P29 Pab-Mir-154-P30 Pab-Mir-154-P31 Pab-Mir-154-P32 Pab-Mir-154-P33 Pab-Mir-154-P34

Orthologues

Bta-Mir-154-P19 Cfa-Mir-154-P19 Cja-Mir-154-P19 Cpo-Mir-154-P19 Dno-Mir-154-P19 Eca-Mir-154-P19-v1 Eca-Mir-154-P19-v2 Ete-Mir-154-P19 Hsa-Mir-154-P19 Laf-Mir-154-P19 Mml-Mir-154-P19 Mmu-Mir-154-P19 Ocu-Mir-154-P19 Rno-Mir-154-P19

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054694.2: 105479320-105479383 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUCCUGUCCGUGCUGCUGUUUCAUACUUGAGGAGAAAUUAUCCUUGGUGUGUUCGCUUUAUUUAUGAUGAAUCAUACAAGGACAAUUUCUUUUUGAGUAUCAAAUCUUGCCUCGGCAGACUUCC

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Structure

        10          20        30        40        50         60 
UUCCUGUCCGUGCUGCU--|   C     UG          A      G    -   GCUUUA 
                   GUUU AUACU  AGGAGAAAUU UCCUUG UGUG UUC      U
                   UAAA UAUGA  UUUUCUUUAA AGGAAC AUAC AAG      U
CCUUCAGACGGCUCCGUUC^   C     GU          C      -    U   UAGUAU 
  120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Star sequence

Pab-Mir-154-P19_5p*

mirBase accession

None

Sequence

0- GGAGAAAUUAUCCUUGGUGUGUUC -24

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Mature sequence

Pab-Mir-154-P19_3p

mirBase accession

None

Sequence

40- AUCAUACAAGGACAAUUUCUUUUU -64

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