MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-154-P4

Family name MIR-154 (all species)
Seed AUGUAAU
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-154-P1  Pab-Mir-154-P2-v1  Pab-Mir-154-P2-v2  Pab-Mir-154-P3-v1  Pab-Mir-154-P3-v2  Pab-Mir-154-P5  Pab-Mir-154-P6a-v1  Pab-Mir-154-P6a-v2  Pab-Mir-154-P6b  Pab-Mir-154-P7  Pab-Mir-154-P8a  Pab-Mir-154-P8b  Pab-Mir-154-P9  Pab-Mir-154-P10  Pab-Mir-154-P11  Pab-Mir-154-P12  Pab-Mir-154-P14  Pab-Mir-154-P16a  Pab-Mir-154-P16b  Pab-Mir-154-P17  Pab-Mir-154-P18  Pab-Mir-154-P19  Pab-Mir-154-P20  Pab-Mir-154-P21  Pab-Mir-154-P23  Pab-Mir-154-P24  Pab-Mir-154-P25  Pab-Mir-154-P26  Pab-Mir-154-P28  Pab-Mir-154-P29  Pab-Mir-154-P30  Pab-Mir-154-P31  Pab-Mir-154-P32  Pab-Mir-154-P33  Pab-Mir-154-P34 
Orthologues Bta-Mir-154-P4  Cfa-Mir-154-P4  Cja-Mir-154-P4  Cpo-Mir-154-P4  Dno-Mir-154-P4  Eca-Mir-154-P4  Ete-Mir-154-P4  Hsa-Mir-154-P4  Laf-Mir-154-P4  Mml-Mir-154-P4  Mmu-Mir-154-P4  Rno-Mir-154-P4 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054694.2: 105455995-105456051 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAUCAGCCCUCUCCAAGGUACCUGAAAAGAUGGUUGACCAUAGAACAUGCGCUAUCUCUGUGUCGUAUGUAAUAUGGUCCACAUCUUCUCAAUAUCAAAUUCAGUCACAGAGGGCU
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Structure
        10           20        30        40        50        
ACAUCAGCCCUCUCCAA---|   CC   A      GUU       GA       CUAUC 
                    GGUA  UGA AAGAUG   GACCAUA  ACAUGCG     U
                    CUAU  ACU UUCUAC   CUGGUAU  UGUAUGC     C
UCGGGAGACACUGACUUAAA^   A-   C      AC-       AA       UGUGU 
     110       100         90         80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
-   +
Br Br Li Li
Star sequence

Pab-Mir-154-P4_5p* (predicted)
mirBase accessionNone
Sequence 
0- AUGGUUGACCAUAGAACAUGCG -22
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Mature sequence

Pab-Mir-154-P4_3p (predicted)
mirBase accessionNone
Sequence 
36- UAUGUAAUAUGGUCCACAUCU -57
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