Mir-154-P32

MirGeneDB ID

Pab-Mir-154-P32

Family name

MIR-154 (all species)

Seed

GAUCGAC

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-154-P1 Pab-Mir-154-P2-v1 Pab-Mir-154-P2-v2 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Pab-Mir-154-P4 Pab-Mir-154-P5 Pab-Mir-154-P6a-v1 Pab-Mir-154-P6a-v2 Pab-Mir-154-P6b Pab-Mir-154-P7 Pab-Mir-154-P8a Pab-Mir-154-P8b Pab-Mir-154-P9 Pab-Mir-154-P10 Pab-Mir-154-P11 Pab-Mir-154-P12 Pab-Mir-154-P14 Pab-Mir-154-P16a Pab-Mir-154-P16b Pab-Mir-154-P17 Pab-Mir-154-P18 Pab-Mir-154-P19 Pab-Mir-154-P20 Pab-Mir-154-P21 Pab-Mir-154-P23 Pab-Mir-154-P24 Pab-Mir-154-P25 Pab-Mir-154-P26 Pab-Mir-154-P28 Pab-Mir-154-P29 Pab-Mir-154-P30 Pab-Mir-154-P31 Pab-Mir-154-P33 Pab-Mir-154-P34

Orthologues

Bta-Mir-154-P32 Cfa-Mir-154-P32 Cja-Mir-154-P32 Cpo-Mir-154-P32 Dno-Mir-154-P32 Eca-Mir-154-P32 Ete-Mir-154-P32 Hsa-Mir-154-P32 Laf-Mir-154-P32 Mml-Mir-154-P32 Mmr-Mir-154-P32 Mmu-Mir-154-P32 Ocu-Mir-154-P32 Rno-Mir-154-P32

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054694.2: 105497626-105497681 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCUCAGCGCCUUUCCUGGUACUUGAAGGGAGAUCGACCGUGUUAUAUUCGCUUUAUUGACUUCGAAUAAUACAUGGUUGAUCUUUUCUCAGUAUCAAAUCUCACCUUGGAGGACC

Get precursor sequence

Structure

        10           20        30        40        50       
AGCUCAGCGCCUUUCCU---|     U  AG               UA      CUUUA 
                    GGUACU GA  GGAGAUCGACCGUGU  UAUUCG     U
                    CUAUGA CU  UUUCUAGUUGGUACA  AUAAGC     U
CCAGGAGGUUCCACUCUAAA^     -  CU               UA      UUCAG 
    110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Mature sequence

Pab-Mir-154-P32_5p

mirBase accession

None

Sequence

0- AGAUCGACCGUGUUAUAUUCG -21

Get sequence

Co-mature sequence

Pab-Mir-154-P32_3p

mirBase accession

None

Sequence

35- AAUAAUACAUGGUUGAUCUUU -56

Get sequence