Mir-154-P5

MirGeneDB ID

Pab-Mir-154-P5

Family name

MIR-154 (all species)

Seed

AGGACAC

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-154-P1 Pab-Mir-154-P2-v1 Pab-Mir-154-P2-v2 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Pab-Mir-154-P4 Pab-Mir-154-P6a-v1 Pab-Mir-154-P6a-v2 Pab-Mir-154-P6b Pab-Mir-154-P7 Pab-Mir-154-P8a Pab-Mir-154-P8b Pab-Mir-154-P9 Pab-Mir-154-P10 Pab-Mir-154-P11 Pab-Mir-154-P12 Pab-Mir-154-P14 Pab-Mir-154-P16a Pab-Mir-154-P16b Pab-Mir-154-P17 Pab-Mir-154-P18 Pab-Mir-154-P19 Pab-Mir-154-P20 Pab-Mir-154-P21 Pab-Mir-154-P23 Pab-Mir-154-P24 Pab-Mir-154-P25 Pab-Mir-154-P26 Pab-Mir-154-P28 Pab-Mir-154-P29 Pab-Mir-154-P30 Pab-Mir-154-P31 Pab-Mir-154-P32 Pab-Mir-154-P33 Pab-Mir-154-P34

Orthologues

Bta-Mir-154-P5 Cfa-Mir-154-P5 Cja-Mir-154-P5 Cpo-Mir-154-P5 Dno-Mir-154-P5 Eca-Mir-154-P5 Ete-Mir-154-P5 Hsa-Mir-154-P5 Laf-Mir-154-P5 Mml-Mir-154-P5 Mmr-Mir-154-P5 Mmu-Mir-154-P5 Ocu-Mir-154-P5

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054694.2: 105456559-105456614 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUCAGCGUCACUUCCUGGUAUUUGAAGAUGCGGUUGACCAUGGUGUGUACGCUUUAUUUAUGACGUAGGACACAUGGUCUACUUCUUCUCAAUAUCACAUCUCGCCUCGGAAGACU

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Structure

        10            20         30        40         50       
GUCAGCGUCACUUCCUG----     U-|    UGC   U       G   G-    CUUUA 
                     GUAUU  GAAGA   GGU GACCAUG UGU  UACG     U
                     UAUAA  CUUCU   UCA CUGGUAC ACA  AUGC     U
UCAGAAGGCUCCGCUCUACAC     CU^    ---   U       -   GG    AGUAU 
    110       100        90           80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Star sequence

Pab-Mir-154-P5_5p* (predicted)

mirBase accession

None

Sequence

0- CGGUUGACCAUGGUGUGUACG -21

Get sequence

Mature sequence

Pab-Mir-154-P5_3p

mirBase accession

None

Sequence

35- UAGGACACAUGGUCUACUUCU -56

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