MirGeneDB 3.0

MirGeneDB ID

Mmr-Mir-154-P5

Family name MIR-154 (all species)
Seed AGGACAC
Species Gray mouse lemur (Microcebus murinus)
MiRBase ID
Paralogues Mmr-Mir-154-P1  Mmr-Mir-154-P2-v1  Mmr-Mir-154-P2-v2  Mmr-Mir-154-P3-v1  Mmr-Mir-154-P3-v2  Mmr-Mir-154-P6a-v1  Mmr-Mir-154-P6a-v2  Mmr-Mir-154-P6b  Mmr-Mir-154-P6c  Mmr-Mir-154-P7  Mmr-Mir-154-P8a  Mmr-Mir-154-P8b  Mmr-Mir-154-P9  Mmr-Mir-154-P10  Mmr-Mir-154-P11  Mmr-Mir-154-P12  Mmr-Mir-154-P14  Mmr-Mir-154-P16  Mmr-Mir-154-P17  Mmr-Mir-154-P18  Mmr-Mir-154-P20  Mmr-Mir-154-P21  Mmr-Mir-154-P22  Mmr-Mir-154-P23  Mmr-Mir-154-P24  Mmr-Mir-154-P25  Mmr-Mir-154-P26  Mmr-Mir-154-P28  Mmr-Mir-154-P29  Mmr-Mir-154-P30  Mmr-Mir-154-P31  Mmr-Mir-154-P32  Mmr-Mir-154-P33  Mmr-Mir-154-P34  Mmr-Mir-154-P37 
Orthologues Bta-Mir-154-P5  Cfa-Mir-154-P5  Cja-Mir-154-P5  Cpo-Mir-154-P5  Dno-Mir-154-P5  Eca-Mir-154-P5  Ete-Mir-154-P5  Hsa-Mir-154-P5  Laf-Mir-154-P5  Mml-Mir-154-P5  Mmu-Mir-154-P5  Ocu-Mir-154-P5  Pab-Mir-154-P5 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000165445.3_Mmur_3.0_genomic)
CM007663.1: 12721763-12721818 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P5)
Mir-154-P2-v2 CM007663.1: 12719569-12719626 [+] UCSC Ensembl
Mir-154-P2-v1 CM007663.1: 12719570-12719625 [+] UCSC Ensembl
Mir-154-P37 CM007663.1: 12721366-12721423 [+] UCSC Ensembl
Mir-154-P17 CM007663.1: 12739835-12739897 [+] UCSC Ensembl
Mir-154-P22 CM007663.1: 12745610-12745663 [+] UCSC Ensembl
Mir-154-P30 CM007663.1: 12759249-12759302 [+] UCSC Ensembl
Mir-154-P33 CM007663.1: 12759838-12759893 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUCAACACCACUUCAUGGUAUUUGAAGAUGCGGUUGACCAUGGUGUGUACGCUUUAUUUGUGACGUAGGACACAUGGUCUACUUCUUCUCAAUAUCACAUCUCGCCUUGGAAGACU
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Structure
        10            20         30        40         50       
GUCAACACCACUUCAUG----     U-|    UGC   U       G   G-    CUUUA 
                     GUAUU  GAAGA   GGU GACCAUG UGU  UACG     U
                     UAUAA  CUUCU   UCA CUGGUAC ACA  AUGC     U
UCAGAAGGUUCCGCUCUACAC     CU^    ---   U       -   GG    AGUGU 
    110       100        90           80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Mu Mu Mu Mu Mu Mu Mu Mu
Star sequence

Mmr-Mir-154-P5_5p* (predicted)

mirBase accessionNone
Sequence
0- CGGUUGACCAUGGUGUGUACG -21
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Mature sequence

Mmr-Mir-154-P5_3p

mirBase accessionNone
Sequence
35- UAGGACACAUGGUCUACUUCU -56
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