MirGeneDB 3.0

MirGeneDB ID

Mmr-Mir-154-P6b

Family name MIR-154 (all species)
Seed CCAAUAC
Species Gray mouse lemur (Microcebus murinus)
MiRBase ID
Paralogues Mmr-Mir-154-P1  Mmr-Mir-154-P2-v1  Mmr-Mir-154-P2-v2  Mmr-Mir-154-P3-v1  Mmr-Mir-154-P3-v2  Mmr-Mir-154-P5  Mmr-Mir-154-P6a-v1  Mmr-Mir-154-P6a-v2  Mmr-Mir-154-P6c  Mmr-Mir-154-P7  Mmr-Mir-154-P8a  Mmr-Mir-154-P8b  Mmr-Mir-154-P9  Mmr-Mir-154-P10  Mmr-Mir-154-P11  Mmr-Mir-154-P12  Mmr-Mir-154-P14  Mmr-Mir-154-P16  Mmr-Mir-154-P17  Mmr-Mir-154-P18  Mmr-Mir-154-P20  Mmr-Mir-154-P21  Mmr-Mir-154-P22  Mmr-Mir-154-P23  Mmr-Mir-154-P24  Mmr-Mir-154-P25  Mmr-Mir-154-P26  Mmr-Mir-154-P28  Mmr-Mir-154-P29  Mmr-Mir-154-P30  Mmr-Mir-154-P31  Mmr-Mir-154-P32  Mmr-Mir-154-P33  Mmr-Mir-154-P34  Mmr-Mir-154-P37 
Orthologues Bta-Mir-154-P6b  Cfa-Mir-154-P6b  Cja-Mir-154-P6b  Dno-Mir-154-P6b  Eca-Mir-154-P6b  Hsa-Mir-154-P6b  Laf-Mir-154-P6b  Mml-Mir-154-P6b  Pab-Mir-154-P6b 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000165445.3_Mmur_3.0_genomic)
CM007663.1: 12750026-12750082 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P6b)
Mir-154-P2-v2 CM007663.1: 12719569-12719626 [+] UCSC Ensembl
Mir-154-P2-v1 CM007663.1: 12719570-12719625 [+] UCSC Ensembl
Mir-154-P37 CM007663.1: 12721366-12721423 [+] UCSC Ensembl
Mir-154-P17 CM007663.1: 12739835-12739897 [+] UCSC Ensembl
Mir-154-P22 CM007663.1: 12745610-12745663 [+] UCSC Ensembl
Mir-154-P30 CM007663.1: 12759249-12759302 [+] UCSC Ensembl
Mir-154-P33 CM007663.1: 12759838-12759893 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCAGUGCCACCUCCUGGUACUCGGAGGGAGGUCGUCCGUGGUGAGUUUGCAUUGUUUAAUAAUGCCCAAUACACGGUCGACCUCUUUUCGGUAUCACAUCUCACCGGGUGUCUUC
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Structure
        10           20        30        40        50         
AAGCAGUGCCACCUCCU---|    U             U     GUGAGUUU   UUGUU 
                    GGUAC CGGAGGGAGGUCG CCGUG        GCA     \
                    CUAUG GCUUUUCUCCAGC GGCAC        CGU     U
CUUCUGUGGGCCACUCUACA^    -             U     AUAACC--   AAUAA 
     110       100         90        80        70          60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Mu Mu Mu Mu Mu Mu Mu Mu
Star sequence

Mmr-Mir-154-P6b_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGUCGUCCGUGGUGAGUUUGCA -23
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Mature sequence

Mmr-Mir-154-P6b_3p

mirBase accessionNone
Sequence
36- CCCAAUACACGGUCGACCUCU -57
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