Mir-154-P6b

MirGeneDB ID

Pab-Mir-154-P6b

Family name

MIR-154 (all species)

Seed

CCAAUAC

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-154-P1 Pab-Mir-154-P2-v1 Pab-Mir-154-P2-v2 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Pab-Mir-154-P4 Pab-Mir-154-P5 Pab-Mir-154-P6a-v1 Pab-Mir-154-P6a-v2 Pab-Mir-154-P7 Pab-Mir-154-P8a Pab-Mir-154-P8b Pab-Mir-154-P9 Pab-Mir-154-P10 Pab-Mir-154-P11 Pab-Mir-154-P12 Pab-Mir-154-P14 Pab-Mir-154-P16a Pab-Mir-154-P16b Pab-Mir-154-P17 Pab-Mir-154-P18 Pab-Mir-154-P19 Pab-Mir-154-P20 Pab-Mir-154-P21 Pab-Mir-154-P23 Pab-Mir-154-P24 Pab-Mir-154-P25 Pab-Mir-154-P26 Pab-Mir-154-P28 Pab-Mir-154-P29 Pab-Mir-154-P30 Pab-Mir-154-P31 Pab-Mir-154-P32 Pab-Mir-154-P33 Pab-Mir-154-P34

Orthologues

Bta-Mir-154-P6b Cfa-Mir-154-P6b Cja-Mir-154-P6b Dno-Mir-154-P6b Eca-Mir-154-P6b Hsa-Mir-154-P6b Laf-Mir-154-P6b Mml-Mir-154-P6b Mmr-Mir-154-P6b

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054694.2: 105488232-105488288 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAGCAGUGCCACCUCAUGGUACUCGGAGGGAGGUUGUCCGUGGUGAGUUCGCAUUAUUUAAUGAUGCCCAAUACACGGUCGACCUCUUUUCGGUAUCAGAUCUCACCAGGUGUCUUC

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Structure

        10           20        30        40        50         
GAGCAGUGCCACCUCAU---|    U             U     GUGAGUUC   UUAUU 
                    GGUAC CGGAGGGAGGUUG CCGUG        GCA     \
                    CUAUG GCUUUUCUCCAGC GGCAC        CGU     U
CUUCUGUGGACCACUCUAGA^    -             U     AUAACC--   AGUAA 
     110       100         90        80        70          60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Star sequence

Pab-Mir-154-P6b_5p* (predicted)

mirBase accession

None

Sequence

0- AGGUUGUCCGUGGUGAGUUCGCA -23

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Mature sequence

Pab-Mir-154-P6b_3p

mirBase accession

None

Sequence

36- CCCAAUACACGGUCGACCUCU -57

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