Mir-154-P6b

MirGeneDB ID

Hsa-Mir-154-P6b

Family name

MIR-154 (all species)

Seed

CCAAUAC

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-323b

Paralogues

Hsa-Mir-154-P1 Hsa-Mir-154-P2-v1 Hsa-Mir-154-P2-v2 Hsa-Mir-154-P3-v1 Hsa-Mir-154-P3-v2 Hsa-Mir-154-P4 Hsa-Mir-154-P5 Hsa-Mir-154-P6a-v1 Hsa-Mir-154-P6a-v2 Hsa-Mir-154-P7 Hsa-Mir-154-P8a Hsa-Mir-154-P8b Hsa-Mir-154-P9 Hsa-Mir-154-P10 Hsa-Mir-154-P11 Hsa-Mir-154-P12 Hsa-Mir-154-P14 Hsa-Mir-154-P16a Hsa-Mir-154-P16b Hsa-Mir-154-P17 Hsa-Mir-154-P18 Hsa-Mir-154-P19 Hsa-Mir-154-P20 Hsa-Mir-154-P21 Hsa-Mir-154-P23 Hsa-Mir-154-P24 Hsa-Mir-154-P25 Hsa-Mir-154-P26 Hsa-Mir-154-P28-v1 Hsa-Mir-154-P28-v2 Hsa-Mir-154-P29 Hsa-Mir-154-P30 Hsa-Mir-154-P31 Hsa-Mir-154-P32 Hsa-Mir-154-P33 Hsa-Mir-154-P34

Orthologues

Bta-Mir-154-P6b Cfa-Mir-154-P6b Cja-Mir-154-P6b Dno-Mir-154-P6b Eca-Mir-154-P6b Laf-Mir-154-P6b Mml-Mir-154-P6b Mmr-Mir-154-P6b Pab-Mir-154-P6b

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(hg38)

chr14: 101056233-101056289 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P6b)

Mir-154-P1 chr14: 101022071-101022129 [+] UCSC Ensembl
Mir-154-P2-v2 chr14: 101023339-101023396 [+] UCSC Ensembl
Mir-154-P2-v1 chr14: 101023340-101023395 [+] UCSC Ensembl
Mir-154-P3-v1 chr14: 101023799-101023853 [+] UCSC Ensembl
Mir-154-P3-v2 chr14: 101023800-101023852 [+] UCSC Ensembl
Mir-154-P4 chr14: 101025020-101025076 [+] UCSC Ensembl
Mir-154-P5 chr14: 101025585-101025640 [+] UCSC Ensembl
Mir-154-P6a-v1 chr14: 101025747-101025802 [+] UCSC Ensembl
Mir-154-P6a-v2 chr14: 101025747-101025802 [+] UCSC Ensembl
Mir-154-P7 chr14: 101026035-101026092 [+] UCSC Ensembl
Mir-154-P8a chr14: 101026796-101026855 [+] UCSC Ensembl
Mir-154-P8b chr14: 101027113-101027172 [+] UCSC Ensembl
Mir-154-P9 chr14: 101029648-101029703 [+] UCSC Ensembl
Mir-154-P10 chr14: 101030064-101030120 [+] UCSC Ensembl
Mir-154-P11 chr14: 101031997-101032054 [+] UCSC Ensembl
Mir-154-P12 chr14: 101033768-101033825 [+] UCSC Ensembl
Mir-376-P2 chr14: 101039695-101039752 [+] UCSC Ensembl
Mir-376-P3 chr14: 101040081-101040138 [+] UCSC Ensembl
Mir-154-P14 chr14: 101040234-101040289 [+] UCSC Ensembl
Mir-376-P4 chr14: 101040460-101040517 [+] UCSC Ensembl
Mir-376-P5 chr14: 101040788-101040845 [+] UCSC Ensembl
Mir-154-P16a chr14: 101042991-101043050 [+] UCSC Ensembl
Mir-154-P16b chr14: 101044212-101044271 [+] UCSC Ensembl
Mir-154-P17 chr14: 101045927-101045989 [+] UCSC Ensembl
Mir-154-P18 chr14: 101046469-101046526 [+] UCSC Ensembl
Mir-154-P19 chr14: 101047329-101047392 [+] UCSC Ensembl
Mir-154-P20 chr14: 101047911-101047969 [+] UCSC Ensembl
Mir-544 chr14: 101048676-101048732 [+] UCSC Ensembl
Mir-154-P21 chr14: 101049572-101049631 [+] UCSC Ensembl
Mir-154-P23 chr14: 101052458-101052515 [+] UCSC Ensembl
Mir-154-P24 chr14: 101054316-101054373 [+] UCSC Ensembl
Mir-134 chr14: 101054694-101054754 [+] UCSC Ensembl
Mir-154-P25 chr14: 101055427-101055485 [+] UCSC Ensembl
Mir-154-P6b chr14: 101056233-101056289 [+] UCSC Ensembl
Mir-154-P26 chr14: 101059769-101059826 [+] UCSC Ensembl
Mir-154-P28-v2 chr14: 101060595-101060650 [+] UCSC Ensembl
Mir-154-P28-v1 chr14: 101060596-101060649 [+] UCSC Ensembl
Mir-154-P29 chr14: 101062056-101062115 [+] UCSC Ensembl
Mir-541 chr14: 101064504-101064569 [+] UCSC Ensembl
Mir-154-P30 chr14: 101065314-101065367 [+] UCSC Ensembl
Mir-154-P31 chr14: 101065465-101065519 [+] UCSC Ensembl
Mir-154-P32 chr14: 101065606-101065661 [+] UCSC Ensembl
Mir-154-P33 chr14: 101065925-101065981 [+] UCSC Ensembl
Mir-154-P34 chr14: 101066731-101066786 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAGCAGUGCCACCUCAUGGUACUCGGAGGGAGGUUGUCCGUGGUGAGUUCGCAUUAUUUAAUGAUGCCCAAUACACGGUCGACCUCUUUUCGGUAUCAGAUCUCACCAGGUGUCUUC

Get precursor sequence

Structure

        10           20        30        40        50         
GAGCAGUGCCACCUCAU---|    U             U     GUGAGUUC   UUAUU 
                    GGUAC CGGAGGGAGGUUG CCGUG        GCA     \
                    CUAUG GCUUUUCUCCAGC GGCAC        CGU     U
CUUCUGUGGACCACUCUAGA^    -             U     AUAACC--   AGUAA 
     110       100         90        80        70          60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-154-P6b_5p*

mirBase accession

MIMAT0001630

Sequence

0- AGGUUGUCCGUGGUGAGUUCGCA -23

Get sequence

Proposed targets

microrna.org: MIMAT0001630
TargetScanVert: hsa-miR-323b-5p
TargetMiner: hsa-miR-323b-5p
miRDB: MIMAT0001630

Mature sequence

Hsa-Mir-154-P6b_3p

mirBase accession

MIMAT0015050

Sequence

36- CCCAAUACACGGUCGACCUCU -57

Get sequence

Proposed targets

microrna.org: MIMAT0015050
TargetScanVert: hsa-miR-323b-3p
TargetMiner: hsa-miR-323b-3p
miRDB: MIMAT0015050