MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-154-P12

Family name MIR-154 (all species)
Seed AACAAAC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-154-P1  Pab-Mir-154-P2-v1  Pab-Mir-154-P2-v2  Pab-Mir-154-P3-v1  Pab-Mir-154-P3-v2  Pab-Mir-154-P4  Pab-Mir-154-P5  Pab-Mir-154-P6a-v1  Pab-Mir-154-P6a-v2  Pab-Mir-154-P6b  Pab-Mir-154-P7  Pab-Mir-154-P8a  Pab-Mir-154-P8b  Pab-Mir-154-P9  Pab-Mir-154-P10  Pab-Mir-154-P11  Pab-Mir-154-P14  Pab-Mir-154-P16a  Pab-Mir-154-P16b  Pab-Mir-154-P17  Pab-Mir-154-P18  Pab-Mir-154-P19  Pab-Mir-154-P20  Pab-Mir-154-P21  Pab-Mir-154-P23  Pab-Mir-154-P24  Pab-Mir-154-P25  Pab-Mir-154-P26  Pab-Mir-154-P28  Pab-Mir-154-P29  Pab-Mir-154-P30  Pab-Mir-154-P31  Pab-Mir-154-P32  Pab-Mir-154-P33  Pab-Mir-154-P34 
Orthologues Bta-Mir-154-P12  Cfa-Mir-154-P12  Cja-Mir-154-P12  Cpo-Mir-154-P12  Dno-Mir-154-P12  Eca-Mir-154-P12  Ete-Mir-154-P12  Hsa-Mir-154-P12  Laf-Mir-154-P12  Mml-Mir-154-P12  Mmr-Mir-154-P12  Mmu-Mir-154-P12  Ocu-Mir-154-P12  Rno-Mir-154-P12 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054694.2: 105464778-105464835 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGACGUGCUCAUCUCUGUUACCUGAAAAGAAGUUGCCCAUGUUAUUUUCGCUUUAUAUGUGACGAAACAAACAUGGUGCACUUCUUUUUCGGUAUCAAAUAUCUCCUUGAAGAGCU
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Structure
        10          20        30         40        50        
GAGGACGUGCUCAUCUC--| U    U          U  -       AU     CUUUA 
                   UG UACC GAAAAGAAGU GC CCAUGUU  UUUCG     U
                   AC AUGG UUUUUCUUCA CG GGUACAA  AAAGC     A
UCGAGAAGUUCCUCUAUAA^ U    C          -  U       AC     AGUGU 
      110       100        90         80        70        60
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17)
Star sequence

Pab-Mir-154-P12_5p*
mirBase accessionNone
Sequence 
0- GAAGUUGCCCAUGUUAUUUUCG -22
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Mature sequence

Pab-Mir-154-P12_3p
mirBase accessionNone
Sequence 
36- AAACAAACAUGGUGCACUUCUU -58
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