MirGeneDB 3.0

MirGeneDB ID

Ete-Mir-154-P12

Family name MIR-154 (all species)
Seed AACAAAC
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues Ete-Mir-154-P1  Ete-Mir-154-P2-v1  Ete-Mir-154-P2-v2  Ete-Mir-154-P3-v1  Ete-Mir-154-P3-v2  Ete-Mir-154-P4  Ete-Mir-154-P5  Ete-Mir-154-P6a-v1  Ete-Mir-154-P6a-v2  Ete-Mir-154-P7  Ete-Mir-154-P8a  Ete-Mir-154-P8b  Ete-Mir-154-P9  Ete-Mir-154-P10  Ete-Mir-154-P11  Ete-Mir-154-P16  Ete-Mir-154-P17  Ete-Mir-154-P18  Ete-Mir-154-P19  Ete-Mir-154-P20  Ete-Mir-154-P21  Ete-Mir-154-P22  Ete-Mir-154-P23  Ete-Mir-154-P24  Ete-Mir-154-P26  Ete-Mir-154-P27  Ete-Mir-154-P28-v1  Ete-Mir-154-P28-v2  Ete-Mir-154-P29  Ete-Mir-154-P30  Ete-Mir-154-P31  Ete-Mir-154-P32  Ete-Mir-154-P33  Ete-Mir-154-P34 
Orthologues Bta-Mir-154-P12  Cfa-Mir-154-P12  Cja-Mir-154-P12  Cpo-Mir-154-P12  Dno-Mir-154-P12  Eca-Mir-154-P12  Hsa-Mir-154-P12  Laf-Mir-154-P12  Mml-Mir-154-P12  Mmr-Mir-154-P12  Mmu-Mir-154-P12  Ocu-Mir-154-P12  Pab-Mir-154-P12  Rno-Mir-154-P12 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(echTel2)
JH980297: 82304366-82304423 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CUACCAGUAUUAGCCUCUGGCACCUGAAAAGAAGUUGCCCAUGUUAUUUUCGCUUUAUAUGUGACGAAACAAACAUGGUGCACUUCUUUUUCGGUACCAACUCUCACCCUGAAGAGCU
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Structure
        10          20        30         40        50        
CUACCAGUAUUAGCCUC--|  C   U          U  -       AU     CUUUA 
                   UGG ACC GAAAAGAAGU GC CCAUGUU  UUUCG     U
                   ACC UGG UUUUUCUUCA CG GGUACAA  AAAGC     A
UCGAGAAGUCCCACUCUCA^  A   C          -  U       AC     AGUGU 
      110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Ete-Mir-154-P12_5p* (predicted)

mirBase accessionNone
Sequence
0- GAAGUUGCCCAUGUUAUUUUCG -22
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Mature sequence

Ete-Mir-154-P12_3p

mirBase accessionNone
Sequence
36- AAACAAACAUGGUGCACUUCUU -58
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