Mir-154-P21

MirGeneDB ID

Ete-Mir-154-P21

Family name

MIR-154 (all species)

Seed

GAAUAAU

Species

Lesser hedgehog tenrec (Echinops telfairi)

MiRBase ID

Paralogues

Ete-Mir-154-P1 Ete-Mir-154-P2-v1 Ete-Mir-154-P2-v2 Ete-Mir-154-P3-v1 Ete-Mir-154-P3-v2 Ete-Mir-154-P4 Ete-Mir-154-P5 Ete-Mir-154-P6a-v1 Ete-Mir-154-P6a-v2 Ete-Mir-154-P7 Ete-Mir-154-P8a Ete-Mir-154-P8b Ete-Mir-154-P9 Ete-Mir-154-P10 Ete-Mir-154-P11 Ete-Mir-154-P12 Ete-Mir-154-P16 Ete-Mir-154-P17 Ete-Mir-154-P18 Ete-Mir-154-P19 Ete-Mir-154-P20 Ete-Mir-154-P22 Ete-Mir-154-P23 Ete-Mir-154-P24 Ete-Mir-154-P26 Ete-Mir-154-P27 Ete-Mir-154-P28-v1 Ete-Mir-154-P28-v2 Ete-Mir-154-P29 Ete-Mir-154-P30 Ete-Mir-154-P31 Ete-Mir-154-P32 Ete-Mir-154-P33 Ete-Mir-154-P34

Orthologues

Bta-Mir-154-P21 Cfa-Mir-154-P21 Cja-Mir-154-P21 Cpo-Mir-154-P21 Eca-Mir-154-P21 Hsa-Mir-154-P21 Laf-Mir-154-P21 Mml-Mir-154-P21 Mmr-Mir-154-P21 Ocu-Mir-154-P21 Pab-Mir-154-P21

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(echTel2)

JH980297: 82292032-82292087 [-] UCSC

Precursor
(pre-Mir +30nt flank)

GCCAGAAGCCAUUCGAGGAUAUUUGAGGGGAGGUUAUCCGUGUUCUGUUCGUGUCAUUCGUCAUGAAUAAUACAUGGAUAACCUCUUUUUGAAUAUCAGACUAUUCCUCGAGGGCC

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Structure

        10          20        30        40        50       
GCCAGAAGCCAUUCGAG--|     UG                  UC        UCA 
                   GAUAUU  AGGGGAGGUUAUCCGUGU  UGUUCGUG   U
                   CUAUAA  UUUUCUCCAAUAGGUACA  AUAAGUAC   U
CCGGGAGCUCCUUAUCAGA^     GU                  UA        UGC 
    110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

To

Star sequence

Ete-Mir-154-P21_5p*

mirBase accession

None

Sequence

0- AGGUUAUCCGUGUUCUGUUCGUG -23

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Mature sequence

Ete-Mir-154-P21_3p

mirBase accession

None

Sequence

33- UGAAUAAUACAUGGAUAACCUCU -56

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