Mir-154-P16

MirGeneDB ID

Ete-Mir-154-P16

Family name

MIR-154 (all species)

Seed

GAGGAUA

Species

Lesser hedgehog tenrec (Echinops telfairi)

MiRBase ID

Paralogues

Ete-Mir-154-P1 Ete-Mir-154-P2-v1 Ete-Mir-154-P2-v2 Ete-Mir-154-P3-v1 Ete-Mir-154-P3-v2 Ete-Mir-154-P4 Ete-Mir-154-P5 Ete-Mir-154-P6a-v1 Ete-Mir-154-P6a-v2 Ete-Mir-154-P7 Ete-Mir-154-P8a Ete-Mir-154-P8b Ete-Mir-154-P9 Ete-Mir-154-P10 Ete-Mir-154-P11 Ete-Mir-154-P12 Ete-Mir-154-P17 Ete-Mir-154-P18 Ete-Mir-154-P19 Ete-Mir-154-P20 Ete-Mir-154-P21 Ete-Mir-154-P22 Ete-Mir-154-P23 Ete-Mir-154-P24 Ete-Mir-154-P26 Ete-Mir-154-P27 Ete-Mir-154-P28-v1 Ete-Mir-154-P28-v2 Ete-Mir-154-P29 Ete-Mir-154-P30 Ete-Mir-154-P31 Ete-Mir-154-P32 Ete-Mir-154-P33 Ete-Mir-154-P34

Orthologues

Bta-Mir-154-P16 Cfa-Mir-154-P16 Cja-Mir-154-P16a Cja-Mir-154-P16b Cpo-Mir-154-P16 Dno-Mir-154-P16c Dno-Mir-154-P16d Eca-Mir-154-P16 Hsa-Mir-154-P16a Hsa-Mir-154-P16b Laf-Mir-154-P16 Mml-Mir-154-P16a Mml-Mir-154-P16b Mmr-Mir-154-P16 Pab-Mir-154-P16a Pab-Mir-154-P16b

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(echTel2)

JH980297: 82297259-82297317 [-] UCSC

Precursor
(pre-Mir +30nt flank)

CUCACCGAGGCUGCCCUUUGGUACUUGAAGAGAGGAUACCCUUGUAUGUUCACUCCAUUCAUGACGAAUAUACAGGGGGAGACUCUUAUUUGCGUAUCAAACUCUGUCUGGGAAGGCGC

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Structure

        10          20         30        40        50        
CUCACCGAGGCUGCCCU--       U    -|    GAUA             ACUCCA 
                   UUGGUAC UGAA GAGAG    CCCUUGUAUGUUC      U
                   AACUAUG GUUU UUCUC    GGGGACAUAUAAG      U
CGCGGAAGGGUCUGUCUCA       C    A^    AGAG             CAGUAC 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

To

Mature sequence

Ete-Mir-154-P16_5p

mirBase accession

None

Sequence

0- AGAGGAUACCCUUGUAUGUUCA -22

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Co-mature sequence

Ete-Mir-154-P16_3p

mirBase accession

None

Sequence

36- AAUAUACAGGGGGAGACUCUUAU -59

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