MirGeneDB ID | Cja-Mir-154-P16b |
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Family name | MIR-154 (all species) |
Seed | UAUACGG |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-154-P1 Cja-Mir-154-P2 Cja-Mir-154-P3 Cja-Mir-154-P4 Cja-Mir-154-P5 Cja-Mir-154-P6a Cja-Mir-154-P6b Cja-Mir-154-P7 Cja-Mir-154-P8a Cja-Mir-154-P9 Cja-Mir-154-P10 Cja-Mir-154-P11 Cja-Mir-154-P12 Cja-Mir-154-P14 Cja-Mir-154-P16a Cja-Mir-154-P17 Cja-Mir-154-P18 Cja-Mir-154-P19 Cja-Mir-154-P20 Cja-Mir-154-P21 Cja-Mir-154-P22 Cja-Mir-154-P23 Cja-Mir-154-P24 Cja-Mir-154-P25 Cja-Mir-154-P26 Cja-Mir-154-P28 Cja-Mir-154-P29 Cja-Mir-154-P30 Cja-Mir-154-P31 Cja-Mir-154-P32 Cja-Mir-154-P33 Cja-Mir-154-P34 |
Orthologues | Bta-Mir-154-P16 Cfa-Mir-154-P16 Cpo-Mir-154-P16 Eca-Mir-154-P16 Ete-Mir-154-P16 Hsa-Mir-154-P16b Laf-Mir-154-P16 Mml-Mir-154-P16b Mmr-Mir-154-P16 Pab-Mir-154-P16b |
Node of Origin (locus) | Simiiformes |
Node of Origin (family) | Eutheria |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021924.1: 131858660-131858717 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | ACUGUCUGAGCCACUCUUUGGUACUUGAAGAGAGGAUACCCUUGUGUGUUCACUUGAUUAAUGGCGAAUAUACGGGGGAGACUCUUCUUUGCGUAUCAAACUCUGUCGGGGAAGGCGCGet precursor sequence |
Structure | 10 20 30 40 50 ACUGUCUGAGCCACUCU-- U -| GAUA ACUUGA UUGGUAC UGAAG AGAG CCCUUGUGUGUUC U AACUAUG GUUUC UCUC GGGGGCAUAUAAG U CGCGGAAGGGGCUGUCUCA C U^ AGA- CGGUAA 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Star sequence | Cja-Mir-154-P16b_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGAGGAUACCCUUGUGUGUUC -21
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|
Mature sequence | Cja-Mir-154-P16b_3p |
mirBase accession | None |
Sequence |
37- AUAUACGGGGGAGACUCUUCU -58
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|