MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-154-P16b

Family name MIR-154 (all species)
Seed UAUACGG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-154-P1  Cja-Mir-154-P2  Cja-Mir-154-P3  Cja-Mir-154-P4  Cja-Mir-154-P5  Cja-Mir-154-P6a  Cja-Mir-154-P6b  Cja-Mir-154-P7  Cja-Mir-154-P8a  Cja-Mir-154-P9  Cja-Mir-154-P10  Cja-Mir-154-P11  Cja-Mir-154-P12  Cja-Mir-154-P14  Cja-Mir-154-P16a  Cja-Mir-154-P17  Cja-Mir-154-P18  Cja-Mir-154-P19  Cja-Mir-154-P20  Cja-Mir-154-P21  Cja-Mir-154-P22  Cja-Mir-154-P23  Cja-Mir-154-P24  Cja-Mir-154-P25  Cja-Mir-154-P26  Cja-Mir-154-P28  Cja-Mir-154-P29  Cja-Mir-154-P30  Cja-Mir-154-P31  Cja-Mir-154-P32  Cja-Mir-154-P33  Cja-Mir-154-P34 
Orthologues Bta-Mir-154-P16  Cfa-Mir-154-P16  Cpo-Mir-154-P16  Eca-Mir-154-P16  Ete-Mir-154-P16  Hsa-Mir-154-P16b  Laf-Mir-154-P16  Mml-Mir-154-P16b  Mmr-Mir-154-P16  Pab-Mir-154-P16b 
Node of Origin (locus) Simiiformes
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 131858660-131858717 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUGUCUGAGCCACUCUUUGGUACUUGAAGAGAGGAUACCCUUGUGUGUUCACUUGAUUAAUGGCGAAUAUACGGGGGAGACUCUUCUUUGCGUAUCAAACUCUGUCGGGGAAGGCGC
Get precursor sequence
Structure
        10          20        30         40        50        
ACUGUCUGAGCCACUCU--       U     -|   GAUA             ACUUGA 
                   UUGGUAC UGAAG AGAG    CCCUUGUGUGUUC      U
                   AACUAUG GUUUC UCUC    GGGGGCAUAUAAG      U
CGCGGAAGGGGCUGUCUCA       C     U^   AGA-             CGGUAA 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
-   +
To
Star sequence

Cja-Mir-154-P16b_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGAGGAUACCCUUGUGUGUUC -21
Get sequence
Mature sequence

Cja-Mir-154-P16b_3p
mirBase accessionNone
Sequence 
37- AUAUACGGGGGAGACUCUUCU -58
Get sequence