MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-154-P26

Family name MIR-154 (all species)
Seed AGGUUAU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-154-P1  Cja-Mir-154-P2  Cja-Mir-154-P3  Cja-Mir-154-P4  Cja-Mir-154-P5  Cja-Mir-154-P6a  Cja-Mir-154-P6b  Cja-Mir-154-P7  Cja-Mir-154-P8a  Cja-Mir-154-P9  Cja-Mir-154-P10  Cja-Mir-154-P11  Cja-Mir-154-P12  Cja-Mir-154-P14  Cja-Mir-154-P16a  Cja-Mir-154-P16b  Cja-Mir-154-P17  Cja-Mir-154-P18  Cja-Mir-154-P19  Cja-Mir-154-P20  Cja-Mir-154-P21  Cja-Mir-154-P22  Cja-Mir-154-P23  Cja-Mir-154-P24  Cja-Mir-154-P25  Cja-Mir-154-P28  Cja-Mir-154-P29  Cja-Mir-154-P30  Cja-Mir-154-P31  Cja-Mir-154-P32  Cja-Mir-154-P33  Cja-Mir-154-P34 
Orthologues Bta-Mir-154-P26  Cpo-Mir-154-P26  Dno-Mir-154-P26  Eca-Mir-154-P26  Ete-Mir-154-P26  Hsa-Mir-154-P26  Laf-Mir-154-P26  Mml-Mir-154-P26  Mmr-Mir-154-P26  Mmu-Mir-154-P26  Ocu-Mir-154-P26  Pab-Mir-154-P26  Rno-Mir-154-P26 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 131874498-131874555 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGUCUGUGCUAGCAUGUGGUACUUGAAGAUAGGUUAUCCGUGUUGCCUUCGCUUUACUUGUGACGAAUCAUACGCGGUUGACCUAUUUUCCAGUGCCAAAUCCUGCCUUGGAGGGCU
Get precursor sequence
Structure
        10          20        30        40        50        
GAGUCUGUGCUAGCAUG--|      U            U      UGCC    CUUUA 
                   UGGUACU GAAGAUAGGUUA CCGUGU    UUCG     C
                   ACCGUGA CUUUUAUCCAGU GGCGCA    AAGC     U
UCGGGAGGUUCCGUCCUAA^      C            U      UACU    AGUGU 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cja-Mir-154-P26_5p
mirBase accessionNone
Sequence 
0- UAGGUUAUCCGUGUUGCCUUCG -22
Get sequence
Star sequence

Cja-Mir-154-P26_3p* (predicted)
mirBase accessionNone
Sequence 
36- AAUCAUACGCGGUUGACCUAUU -58
Get sequence