Mir-154-P12

MirGeneDB ID

Cja-Mir-154-P12

Family name

MIR-154 (all species)

Seed

AACAAAC

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-154-P1 Cja-Mir-154-P2 Cja-Mir-154-P3 Cja-Mir-154-P4 Cja-Mir-154-P5 Cja-Mir-154-P6a Cja-Mir-154-P6b Cja-Mir-154-P7 Cja-Mir-154-P8a Cja-Mir-154-P9 Cja-Mir-154-P10 Cja-Mir-154-P11 Cja-Mir-154-P14 Cja-Mir-154-P16a Cja-Mir-154-P16b Cja-Mir-154-P17 Cja-Mir-154-P18 Cja-Mir-154-P19 Cja-Mir-154-P20 Cja-Mir-154-P21 Cja-Mir-154-P22 Cja-Mir-154-P23 Cja-Mir-154-P24 Cja-Mir-154-P25 Cja-Mir-154-P26 Cja-Mir-154-P28 Cja-Mir-154-P29 Cja-Mir-154-P30 Cja-Mir-154-P31 Cja-Mir-154-P32 Cja-Mir-154-P33 Cja-Mir-154-P34

Orthologues

Bta-Mir-154-P12 Cfa-Mir-154-P12 Cpo-Mir-154-P12 Dno-Mir-154-P12 Eca-Mir-154-P12 Ete-Mir-154-P12 Hsa-Mir-154-P12 Laf-Mir-154-P12 Mml-Mir-154-P12 Mmr-Mir-154-P12 Mmu-Mir-154-P12 Ocu-Mir-154-P12 Pab-Mir-154-P12 Rno-Mir-154-P12

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021924.1: 131848844-131848901 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAGGACGUGCUCGUCUCUGGUACCUGAAAAGAAGUUGCCCAUGUUAUUUUCGCUUUAUAUGUGACGAAACAAACAUGGUGCACUUCUUUUUCGGUAUCAAAUCUCUCCUUGAAGAGCC

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Structure

        10          20        30         40        50        
GAGGACGUGCUCGUCUC--|      U          U  -       AU     CUUUA 
                   UGGUACC GAAAAGAAGU GC CCAUGUU  UUUCG     U
                   ACUAUGG UUUUUCUUCA CG GGUACAA  AAAGC     A
CCGAGAAGUUCCUCUCUAA^      C          -  U       AC     AGUGU 
      110       100        90         80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Cja-Mir-154-P12_5p* (predicted)

mirBase accession

None

Sequence

0- GAAGUUGCCCAUGUUAUUUUCG -22

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Mature sequence

Cja-Mir-154-P12_3p (predicted)

mirBase accession

None

Sequence

36- AAACAAACAUGGUGCACUUCUU -58

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