MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-154-P24

Family name MIR-154 (all species)
Seed AAGUUGU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-154-P1  Cja-Mir-154-P2  Cja-Mir-154-P3  Cja-Mir-154-P4  Cja-Mir-154-P5  Cja-Mir-154-P6a  Cja-Mir-154-P6b  Cja-Mir-154-P7  Cja-Mir-154-P8a  Cja-Mir-154-P9  Cja-Mir-154-P10  Cja-Mir-154-P11  Cja-Mir-154-P12  Cja-Mir-154-P14  Cja-Mir-154-P16a  Cja-Mir-154-P16b  Cja-Mir-154-P17  Cja-Mir-154-P18  Cja-Mir-154-P19  Cja-Mir-154-P20  Cja-Mir-154-P21  Cja-Mir-154-P22  Cja-Mir-154-P23  Cja-Mir-154-P25  Cja-Mir-154-P26  Cja-Mir-154-P28  Cja-Mir-154-P29  Cja-Mir-154-P30  Cja-Mir-154-P31  Cja-Mir-154-P32  Cja-Mir-154-P33  Cja-Mir-154-P34 
Orthologues Bta-Mir-154-P24  Cfa-Mir-154-P24  Cpo-Mir-154-P24  Dno-Mir-154-P24  Eca-Mir-154-P24  Ete-Mir-154-P24  Hsa-Mir-154-P24  Laf-Mir-154-P24  Mml-Mir-154-P24  Mmr-Mir-154-P24  Mmu-Mir-154-P24  Ocu-Mir-154-P24  Pab-Mir-154-P24  Rno-Mir-154-P24 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 131868718-131868774 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGUCUCUGCUUUGCCGUGGUACUUGAAGAGAAGUUGUUCGUGGUGGAUUCGCUUUACUUAUGACGAAUCAUUCACGGACAACACUUUUUUCAGUACCAAAUGCUACCUCUAAGGAC
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Structure
        10         20        30         40        50        
UUGUCUCUGCUUUGCCG-|      U       A-           UG      CUUUA 
                  UGGUACU GAAGAGA  GUUGUUCGUGG  GAUUCG     C
                  ACCAUGA CUUUUUU  CAACAGGCACU  CUAAGC     U
CAGGAAUCUCCAUCGUAA^      -       CA           UA      AGUAU 
     110       100         90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cja-Mir-154-P24_5p
mirBase accessionNone
Sequence 
0- GAAGUUGUUCGUGGUGGAUUCG -22
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Star sequence

Cja-Mir-154-P24_3p* (predicted)
mirBase accessionNone
Sequence 
35- GAAUCAUUCACGGACAACACUU -57
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