MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-154-P11

Family name MIR-154 (all species)
Seed AACAUUC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-154-P1  Cja-Mir-154-P2  Cja-Mir-154-P3  Cja-Mir-154-P4  Cja-Mir-154-P5  Cja-Mir-154-P6a  Cja-Mir-154-P6b  Cja-Mir-154-P7  Cja-Mir-154-P8a  Cja-Mir-154-P9  Cja-Mir-154-P10  Cja-Mir-154-P12  Cja-Mir-154-P14  Cja-Mir-154-P16a  Cja-Mir-154-P16b  Cja-Mir-154-P17  Cja-Mir-154-P18  Cja-Mir-154-P19  Cja-Mir-154-P20  Cja-Mir-154-P21  Cja-Mir-154-P22  Cja-Mir-154-P23  Cja-Mir-154-P24  Cja-Mir-154-P25  Cja-Mir-154-P26  Cja-Mir-154-P28  Cja-Mir-154-P29  Cja-Mir-154-P30  Cja-Mir-154-P31  Cja-Mir-154-P32  Cja-Mir-154-P33  Cja-Mir-154-P34 
Orthologues Bta-Mir-154-P11  Cfa-Mir-154-P11  Cpo-Mir-154-P11  Dno-Mir-154-P11  Eca-Mir-154-P11  Ete-Mir-154-P11  Hsa-Mir-154-P11  Laf-Mir-154-P11  Mml-Mir-154-P11  Mmr-Mir-154-P11  Mmu-Mir-154-P11  Ocu-Mir-154-P11  Pab-Mir-154-P11  Rno-Mir-154-P11 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 131846833-131846890 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGACGGUGCUGACGUGCGGUACUUAAUGAGAAGUUGCCCGUGUUGUUUUCGCUUUAUUUGUGACGAAACAUUCGCGGUGCACUUCUUUUUCAGUAUCCUAUUCCGCCUGGAAGACGU
Get precursor sequence
Structure
        10          20        30         40         50        
CCGACGGUGCUGACGUGC--      U  U      U   -     U-|    U  CUUUA 
                    GGUACU AA GAGAAG UGC CCGUG  UGUUU CG     U
                    CUAUGA UU UUCUUC ACG GGCGC  ACAAA GC     U
UGCAGAAGGUCCGCCUUAUC      C  U      -   U     UU^    -  AGUGU 
      110       100        90         80        70         60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-154-P11_5p* (predicted)
mirBase accessionNone
Sequence 
0- GAAGUUGCCCGUGUUGUUUUCG -22
Get sequence
Mature sequence

Cja-Mir-154-P11_3p (predicted)
mirBase accessionNone
Sequence 
36- AAACAUUCGCGGUGCACUUCUU -58
Get sequence