MirGeneDB 3.0

MirGeneDB ID

Mmu-Mir-154-P11

Family name MIR-154 (all species)
Seed AACAUUC
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-543
Paralogues Mmu-Mir-154-P1  Mmu-Mir-154-P2-v1  Mmu-Mir-154-P2-v2  Mmu-Mir-154-P3-v1  Mmu-Mir-154-P3-v2  Mmu-Mir-154-P4  Mmu-Mir-154-P5  Mmu-Mir-154-P6a-v1  Mmu-Mir-154-P6a-v2  Mmu-Mir-154-P7  Mmu-Mir-154-P8-o1  Mmu-Mir-154-P9  Mmu-Mir-154-P10-v1  Mmu-Mir-154-P10-v2  Mmu-Mir-154-P12  Mmu-Mir-154-P15  Mmu-Mir-154-P17  Mmu-Mir-154-P18  Mmu-Mir-154-P19  Mmu-Mir-154-P24  Mmu-Mir-154-P25  Mmu-Mir-154-P26  Mmu-Mir-154-P28-v1  Mmu-Mir-154-P28-v2  Mmu-Mir-154-P29  Mmu-Mir-154-P30  Mmu-Mir-154-P31  Mmu-Mir-154-P32  Mmu-Mir-154-P33 
Orthologues Bta-Mir-154-P11  Cfa-Mir-154-P11  Cja-Mir-154-P11  Cpo-Mir-154-P11  Dno-Mir-154-P11  Eca-Mir-154-P11  Ete-Mir-154-P11  Hsa-Mir-154-P11  Laf-Mir-154-P11  Mml-Mir-154-P11  Mmr-Mir-154-P11  Ocu-Mir-154-P11  Pab-Mir-154-P11  Rno-Mir-154-P11 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(mm10)
chr12: 109717268-109717325 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P11)
Mir-154-P1 chr12: 109709065-109709122 [+] UCSC Ensembl
Mir-154-P2-v2 chr12: 109710189-109710246 [+] UCSC Ensembl
Mir-154-P2-v1 chr12: 109710190-109710245 [+] UCSC Ensembl
Mir-154-P3-v1 chr12: 109710643-109710697 [+] UCSC Ensembl
Mir-154-P3-v2 chr12: 109710644-109710696 [+] UCSC Ensembl
Mir-154-P4 chr12: 109711806-109711862 [+] UCSC Ensembl
Mir-154-P5 chr12: 109712361-109712416 [+] UCSC Ensembl
Mir-154-P6a-v1 chr12: 109712523-109712578 [+] UCSC Ensembl
Mir-154-P6a-v2 chr12: 109712523-109712578 [+] UCSC Ensembl
Mir-154-P7 chr12: 109712823-109712880 [+] UCSC Ensembl
Mir-154-P8-o1 chr12: 109713503-109713562 [+] UCSC Ensembl
Mir-154-P9 chr12: 109715334-109715389 [+] UCSC Ensembl
Mir-154-P10-v1 chr12: 109715715-109715771 [+] UCSC Ensembl
Mir-154-P10-v2 chr12: 109715716-109715770 [+] UCSC Ensembl
Mir-666 chr12: 109717103-109717163 [+] UCSC Ensembl
Mir-154-P11 chr12: 109717268-109717325 [+] UCSC Ensembl
Mir-154-P12 chr12: 109718757-109718816 [+] UCSC Ensembl
Mir-667 chr12: 109720020-109720083 [+] UCSC Ensembl
Mir-376-P2 chr12: 109722733-109722790 [+] UCSC Ensembl
Mir-376-P4 chr12: 109723471-109723528 [+] UCSC Ensembl
Mir-376-P5 chr12: 109723787-109723844 [+] UCSC Ensembl
Mir-154-P15 chr12: 109724322-109724384 [+] UCSC Ensembl
Mir-154-P17 chr12: 109726829-109726891 [+] UCSC Ensembl
Mir-154-P18 chr12: 109727346-109727403 [+] UCSC Ensembl
Mir-154-P19 chr12: 109728136-109728197 [+] UCSC Ensembl
Mir-544 chr12: 109729335-109729391 [+] UCSC Ensembl
Mir-154-P24 chr12: 109733781-109733838 [+] UCSC Ensembl
Mir-134 chr12: 109734145-109734205 [+] UCSC Ensembl
Mir-154-P25 chr12: 109734910-109734968 [+] UCSC Ensembl
Mir-154-P26 chr12: 109738438-109738495 [+] UCSC Ensembl
Mir-154-P28-v2 chr12: 109739132-109739187 [+] UCSC Ensembl
Mir-154-P28-v1 chr12: 109739133-109739186 [+] UCSC Ensembl
Mir-154-P29 chr12: 109740515-109740574 [+] UCSC Ensembl
Mir-541 chr12: 109742422-109742487 [+] UCSC Ensembl
Mir-154-P30 chr12: 109743172-109743225 [+] UCSC Ensembl
Mir-154-P31 chr12: 109743303-109743358 [+] UCSC Ensembl
Mir-154-P32 chr12: 109743431-109743486 [+] UCSC Ensembl
Mir-154-P33 chr12: 109743729-109743784 [+] UCSC Ensembl
Mir-3072 chr12: 109747893-109747949 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCAUGCUGCUGACGUACGGUGCUUAAUGAGAAGUUGCCCGCGUGUUUUUCGCUUUAUAUGUGACGAAACAUUCGCGGUGCACUUCUUUUUCAGCAUCCUAUUCUACGUUGAAGACUU
Get precursor sequence
Structure
        10          20        30         40        50        
UCCAUGCUGCUGACGUAC--|     U  U       U  -     U  U     CUUUA 
                    GGUGCU AA GAGAAGU GC CCGCG GU UUUCG     U
                    CUACGA UU UUCUUCA CG GGCGC UA AAAGC     A
UUCAGAAGUUGCAUCUUAUC^     C  U       -  U     U  C     AGUGU 
      110       100        90         80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Star sequence

Mmu-Mir-154-P11_5p*

mirBase accessionMIMAT0017207
Sequence
0- GAAGUUGCCCGCGUGUUUUUCG -22
Get sequence
Proposed targets TargetScanVert: mmu-miR-543-5p
miRDB: MIMAT0017207
Mature sequence

Mmu-Mir-154-P11_3p

mirBase accessionMIMAT0003168
Sequence
36- AAACAUUCGCGGUGCACUUCUU -58
Get sequence
Proposed targets microrna.org: MIMAT0003168
TargetScanVert: mmu-miR-543-3p
miRDB: MIMAT0003168