MirGeneDB 3.0

MirGeneDB ID

Mmr-Mir-154-P11

Family name MIR-154 (all species)
Seed AACAUUC
Species Gray mouse lemur (Microcebus murinus)
MiRBase ID
Paralogues Mmr-Mir-154-P1  Mmr-Mir-154-P2-v1  Mmr-Mir-154-P2-v2  Mmr-Mir-154-P3-v1  Mmr-Mir-154-P3-v2  Mmr-Mir-154-P5  Mmr-Mir-154-P6a-v1  Mmr-Mir-154-P6a-v2  Mmr-Mir-154-P6b  Mmr-Mir-154-P6c  Mmr-Mir-154-P7  Mmr-Mir-154-P8a  Mmr-Mir-154-P8b  Mmr-Mir-154-P9  Mmr-Mir-154-P10  Mmr-Mir-154-P12  Mmr-Mir-154-P14  Mmr-Mir-154-P16  Mmr-Mir-154-P17  Mmr-Mir-154-P18  Mmr-Mir-154-P20  Mmr-Mir-154-P21  Mmr-Mir-154-P22  Mmr-Mir-154-P23  Mmr-Mir-154-P24  Mmr-Mir-154-P25  Mmr-Mir-154-P26  Mmr-Mir-154-P28  Mmr-Mir-154-P29  Mmr-Mir-154-P30  Mmr-Mir-154-P31  Mmr-Mir-154-P32  Mmr-Mir-154-P33  Mmr-Mir-154-P34  Mmr-Mir-154-P37 
Orthologues Bta-Mir-154-P11  Cfa-Mir-154-P11  Cja-Mir-154-P11  Cpo-Mir-154-P11  Dno-Mir-154-P11  Eca-Mir-154-P11  Ete-Mir-154-P11  Hsa-Mir-154-P11  Laf-Mir-154-P11  Mml-Mir-154-P11  Mmu-Mir-154-P11  Ocu-Mir-154-P11  Pab-Mir-154-P11  Rno-Mir-154-P11 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000165445.3_Mmur_3.0_genomic)
CM007663.1: 12727838-12727894 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P11)
Mir-154-P2-v2 CM007663.1: 12719569-12719626 [+] UCSC Ensembl
Mir-154-P2-v1 CM007663.1: 12719570-12719625 [+] UCSC Ensembl
Mir-154-P37 CM007663.1: 12721366-12721423 [+] UCSC Ensembl
Mir-154-P17 CM007663.1: 12739835-12739897 [+] UCSC Ensembl
Mir-154-P22 CM007663.1: 12745610-12745663 [+] UCSC Ensembl
Mir-154-P30 CM007663.1: 12759249-12759302 [+] UCSC Ensembl
Mir-154-P33 CM007663.1: 12759838-12759893 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACAGCGCUGACAUGCGGUACUUAAUGAGAAGUUGCCCGCGUCUUUUUCGCUGUAUUUGUGACGAAACAUUCGCGGUGCACUUCUUUUUCAGUAUCCUAUUCUGCCUUGAAGACGU
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Structure
        10           20        30         40        50       
CCACAGCGCUGACAUGC---|     U  U       U  -     UCUU     CUGUA 
                    GGUACU AA GAGAAGU GC CCGCG    UUUCG     U
                    CUAUGA UU UUCUUCA CG GGCGC    AAAGC     U
UGCAGAAGUUCCGUCUUAUC^     C  U       -  U     UUAC     AGUGU 
     110       100        90         80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Mu Mu Mu Mu Mu Mu Mu Mu
Star sequence

Mmr-Mir-154-P11_5p*

mirBase accessionNone
Sequence
0- AAGUUGCCCGCGUCUUUUUCG -21
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Mature sequence

Mmr-Mir-154-P11_3p

mirBase accessionNone
Sequence
35- AAACAUUCGCGGUGCACUUCUU -57
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