Mir-154-P6a-v1

MirGeneDB ID

Mmr-Mir-154-P6a-v1

Family name

MIR-154 (all species)

Seed

ACAUUAC

Species

Gray mouse lemur (Microcebus murinus)

MiRBase ID

Paralogues

Mmr-Mir-154-P1 Mmr-Mir-154-P2-v1 Mmr-Mir-154-P2-v2 Mmr-Mir-154-P3-v1 Mmr-Mir-154-P3-v2 Mmr-Mir-154-P5 Mmr-Mir-154-P6a-v2 Mmr-Mir-154-P6b Mmr-Mir-154-P6c Mmr-Mir-154-P7 Mmr-Mir-154-P8a Mmr-Mir-154-P8b Mmr-Mir-154-P9 Mmr-Mir-154-P10 Mmr-Mir-154-P11 Mmr-Mir-154-P12 Mmr-Mir-154-P14 Mmr-Mir-154-P16 Mmr-Mir-154-P17 Mmr-Mir-154-P18 Mmr-Mir-154-P20 Mmr-Mir-154-P21 Mmr-Mir-154-P22 Mmr-Mir-154-P23 Mmr-Mir-154-P24 Mmr-Mir-154-P25 Mmr-Mir-154-P26 Mmr-Mir-154-P28 Mmr-Mir-154-P29 Mmr-Mir-154-P30 Mmr-Mir-154-P31 Mmr-Mir-154-P32 Mmr-Mir-154-P33 Mmr-Mir-154-P34 Mmr-Mir-154-P37

Orthologues

Bta-Mir-154-P6a-v1 Bta-Mir-154-P6a-v2 Cfa-Mir-154-P6a-v1 Cfa-Mir-154-P6a-v2 Cja-Mir-154-P6a Cpo-Mir-154-P6a-v1 Cpo-Mir-154-P6a-v2 Dno-Mir-154-P6a-v1 Dno-Mir-154-P6a-v2 Eca-Mir-154-P6a-v1 Eca-Mir-154-P6a-v2 Ete-Mir-154-P6a-v1 Ete-Mir-154-P6a-v2 Hsa-Mir-154-P6a-v1 Hsa-Mir-154-P6a-v2 Laf-Mir-154-P6a Mml-Mir-154-P6a-v1 Mml-Mir-154-P6a-v2 Mmu-Mir-154-P6a-v1 Mmu-Mir-154-P6a-v2 Ocu-Mir-154-P6a-v1 Ocu-Mir-154-P6a-v2 Pab-Mir-154-P6a-v1 Pab-Mir-154-P6a-v2 Rno-Mir-154-P6a-v1 Rno-Mir-154-P6a-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_000165445.3_Mmur_3.0_genomic)

CM007663.1: 12721925-12721980 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P6a-v1)

Mir-154-P2-v2 CM007663.1: 12719569-12719626 [+] UCSC Ensembl
Mir-154-P2-v1 CM007663.1: 12719570-12719625 [+] UCSC Ensembl
Mir-154-P37 CM007663.1: 12721366-12721423 [+] UCSC Ensembl
Mir-154-P17 CM007663.1: 12739835-12739897 [+] UCSC Ensembl
Mir-154-P22 CM007663.1: 12745610-12745663 [+] UCSC Ensembl
Mir-154-P30 CM007663.1: 12759249-12759302 [+] UCSC Ensembl
Mir-154-P33 CM007663.1: 12759838-12759893 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAGCGCCUCUGCUGCUUGGUACUUGGAGAGAGGUGGUCCGUGGCGCGUUCGCUUUAUUUAUGGCGCACAUUACACGGUCGACCUCUCUGCGGUAUCUAAUCCCGCCUUGCAAGCUU

Get precursor sequence

Structure

        10           20        30         40              50    
CAGCGCCUCUGCUGCUU---     U  G        -  U     ------|   GUUCGCU 
                    GGUAC UG AGAGAGGU GG CCGUG      GCGC       U
                    CUAUG GC UCUCUCCA CU GGCAC      CGCG       U
UUCGAACGUUCCGCCCUAAU     -  G        G  -     AUUACA^   GUAUUUA 
    110       100         90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu

Star sequence

Mmr-Mir-154-P6a-v1_5p*

mirBase accession

None

Sequence

0- AGGUGGUCCGUGGCGCGUUCG -21

Get sequence

Mature sequence

Mmr-Mir-154-P6a-v1_3p

mirBase accession

None

Sequence

35- CACAUUACACGGUCGACCUCU -56

Get sequence