MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-154-P6a

Family name MIR-154 (all species)
Seed CACAUUA
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-154-P1  Cja-Mir-154-P2  Cja-Mir-154-P3  Cja-Mir-154-P4  Cja-Mir-154-P5  Cja-Mir-154-P6b  Cja-Mir-154-P7  Cja-Mir-154-P8a  Cja-Mir-154-P9  Cja-Mir-154-P10  Cja-Mir-154-P11  Cja-Mir-154-P12  Cja-Mir-154-P14  Cja-Mir-154-P16a  Cja-Mir-154-P16b  Cja-Mir-154-P17  Cja-Mir-154-P18  Cja-Mir-154-P19  Cja-Mir-154-P20  Cja-Mir-154-P21  Cja-Mir-154-P22  Cja-Mir-154-P23  Cja-Mir-154-P24  Cja-Mir-154-P25  Cja-Mir-154-P26  Cja-Mir-154-P28  Cja-Mir-154-P29  Cja-Mir-154-P30  Cja-Mir-154-P31  Cja-Mir-154-P32  Cja-Mir-154-P33  Cja-Mir-154-P34 
Orthologues Bta-Mir-154-P6a-v1  Bta-Mir-154-P6a-v2  Cfa-Mir-154-P6a-v1  Cfa-Mir-154-P6a-v2  Cpo-Mir-154-P6a-v1  Cpo-Mir-154-P6a-v2  Dno-Mir-154-P6a-v1  Dno-Mir-154-P6a-v2  Eca-Mir-154-P6a-v1  Eca-Mir-154-P6a-v2  Ete-Mir-154-P6a-v1  Ete-Mir-154-P6a-v2  Hsa-Mir-154-P6a-v1  Hsa-Mir-154-P6a-v2  Laf-Mir-154-P6a  Mml-Mir-154-P6a-v1  Mml-Mir-154-P6a-v2  Mmr-Mir-154-P6a-v1  Mmr-Mir-154-P6a-v2  Mmu-Mir-154-P6a-v1  Mmu-Mir-154-P6a-v2  Ocu-Mir-154-P6a-v1  Ocu-Mir-154-P6a-v2  Pab-Mir-154-P6a-v1  Pab-Mir-154-P6a-v2  Rno-Mir-154-P6a-v1  Rno-Mir-154-P6a-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 131838566-131838621 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGUACGGCUGCUGCUCGGUACUUGGAGAGAGGUGGUCCGUGGCGCGUUCGCUUUAUUUAUGGCGCACAUUACACGGUCGACCUCUUUGCAGUAUCUAAUCCCGCCUUGCAAGCUU
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Structure
        10           20        30         40        50       
CAGUACGGCUGCUGCUC---|     U G        -  U     GCGC  U   UUUA 
                    GGUACU G AGAGAGGU GG CCGUG    GU CGC    U
                    CUAUGA C UUUCUCCA CU GGCAC    CA GCG    U
UUCGAACGUUCCGCCCUAAU^     - G        G  -     AUUA  C   GUAU 
    110       100         90        80         70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Cja-Mir-154-P6a_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGUGGUCCGUGGCGCGUUCGC -22
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Mature sequence

Cja-Mir-154-P6a_3p
mirBase accessionNone
Sequence 
34- GCACAUUACACGGUCGACCUCU -56
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