MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-154-P17

Family name MIR-154 (all species)
Seed AUACAAG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-154-P1  Cja-Mir-154-P2  Cja-Mir-154-P3  Cja-Mir-154-P4  Cja-Mir-154-P5  Cja-Mir-154-P6a  Cja-Mir-154-P6b  Cja-Mir-154-P7  Cja-Mir-154-P8a  Cja-Mir-154-P9  Cja-Mir-154-P10  Cja-Mir-154-P11  Cja-Mir-154-P12  Cja-Mir-154-P14  Cja-Mir-154-P16a  Cja-Mir-154-P16b  Cja-Mir-154-P18  Cja-Mir-154-P19  Cja-Mir-154-P20  Cja-Mir-154-P21  Cja-Mir-154-P22  Cja-Mir-154-P23  Cja-Mir-154-P24  Cja-Mir-154-P25  Cja-Mir-154-P26  Cja-Mir-154-P28  Cja-Mir-154-P29  Cja-Mir-154-P30  Cja-Mir-154-P31  Cja-Mir-154-P32  Cja-Mir-154-P33  Cja-Mir-154-P34 
Orthologues Bta-Mir-154-P17  Cfa-Mir-154-P17  Cpo-Mir-154-P17  Dno-Mir-154-P17  Eca-Mir-154-P17  Ete-Mir-154-P17  Hsa-Mir-154-P17  Laf-Mir-154-P17  Mml-Mir-154-P17  Mmr-Mir-154-P17  Mmu-Mir-154-P17  Ocu-Mir-154-P17  Pab-Mir-154-P17  Rno-Mir-154-P17 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 131860356-131860418 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCUGCCCAGUGCUCUUGUUUGGUACUUAAAGCGAGGUUGCCCUUUGUAUAUUCGGUUUAUUGACAUGCAAUAUACAAGGGCAAGCUCUCUGUGAGUAUCAAACCUUGUCUUGGACCCAGCCC
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Structure
        10          20        30        40        50        60 
ACCUGCCCAGUGCUCUU--|           A  C   G        U       CGGUUUA 
                   GUUUGGUACUUA AG GAG UUGCCCUU GUAUAUU       U
                   CAAACUAUGAGU UC CUC AACGGGAA CAUAUAA       U
CCCGACCCAGGUUCUGUUC^           G  U   G        -       CGUACAG 
 120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
-   +
To
Star sequence

Cja-Mir-154-P17_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGCGAGGUUGCCCUUUGUAUAUU -23
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Mature sequence

Cja-Mir-154-P17_3p
mirBase accessionNone
Sequence 
41- UAUACAAGGGCAAGCUCUCUGU -63
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