MirGeneDB ID | Cja-Mir-154-P4 |
---|---|
Family name | MIR-154 (all species) |
Seed | AUGUAAU |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-154-P1 Cja-Mir-154-P2 Cja-Mir-154-P3 Cja-Mir-154-P5 Cja-Mir-154-P6a Cja-Mir-154-P6b Cja-Mir-154-P7 Cja-Mir-154-P8a Cja-Mir-154-P9 Cja-Mir-154-P10 Cja-Mir-154-P11 Cja-Mir-154-P12 Cja-Mir-154-P14 Cja-Mir-154-P16a Cja-Mir-154-P16b Cja-Mir-154-P17 Cja-Mir-154-P18 Cja-Mir-154-P19 Cja-Mir-154-P20 Cja-Mir-154-P21 Cja-Mir-154-P22 Cja-Mir-154-P23 Cja-Mir-154-P24 Cja-Mir-154-P25 Cja-Mir-154-P26 Cja-Mir-154-P28 Cja-Mir-154-P29 Cja-Mir-154-P30 Cja-Mir-154-P31 Cja-Mir-154-P32 Cja-Mir-154-P33 Cja-Mir-154-P34 |
Orthologues | Bta-Mir-154-P4 Cfa-Mir-154-P4 Cpo-Mir-154-P4 Dno-Mir-154-P4 Eca-Mir-154-P4 Ete-Mir-154-P4 Hsa-Mir-154-P4 Laf-Mir-154-P4 Mml-Mir-154-P4 Mmu-Mir-154-P4 Pab-Mir-154-P4 Rno-Mir-154-P4 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021924.1: 131837844-131837900 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | ACAUCAGCCCUGCCCAAGGUACCUGAAAAGAUGGUUGACCAUAGAACAUGCGCUGUCUCUGUGCCGUAUGUAAUAUGGUCCACGUCUUCUCAAUAUCAAAUUCAGUCACAGAGGGCUGet precursor sequence |
Structure | 10 20 30 40 50 ACAUCAGCCCUGCCCAA---| CC A GUU GA CUGUC GGUA UGA AAGAUG GACCAUA ACAUGCG U CUAU ACU UUCUGC CUGGUAU UGUAUGC C UCGGGAGACACUGACUUAAA^ A- C AC- AA CGUGU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Star sequence | Cja-Mir-154-P4_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AUGGUUGACCAUAGAACAUGCG -22
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|
Mature sequence | Cja-Mir-154-P4_3p |
mirBase accession | None |
Sequence |
36- UAUGUAAUAUGGUCCACGUCU -57
Get sequence
|