MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-154-P18

Family name MIR-154 (all species)
Seed AUCGUAC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-154-P1  Cja-Mir-154-P2  Cja-Mir-154-P3  Cja-Mir-154-P4  Cja-Mir-154-P5  Cja-Mir-154-P6a  Cja-Mir-154-P6b  Cja-Mir-154-P7  Cja-Mir-154-P8a  Cja-Mir-154-P9  Cja-Mir-154-P10  Cja-Mir-154-P11  Cja-Mir-154-P12  Cja-Mir-154-P14  Cja-Mir-154-P16a  Cja-Mir-154-P16b  Cja-Mir-154-P17  Cja-Mir-154-P19  Cja-Mir-154-P20  Cja-Mir-154-P21  Cja-Mir-154-P22  Cja-Mir-154-P23  Cja-Mir-154-P24  Cja-Mir-154-P25  Cja-Mir-154-P26  Cja-Mir-154-P28  Cja-Mir-154-P29  Cja-Mir-154-P30  Cja-Mir-154-P31  Cja-Mir-154-P32  Cja-Mir-154-P33  Cja-Mir-154-P34 
Orthologues Bta-Mir-154-P18  Cfa-Mir-154-P18  Cpo-Mir-154-P18  Dno-Mir-154-P18  Eca-Mir-154-P18  Ete-Mir-154-P18  Hsa-Mir-154-P18  Laf-Mir-154-P18  Mml-Mir-154-P18  Mmr-Mir-154-P18  Mmu-Mir-154-P18  Ocu-Mir-154-P18  Pab-Mir-154-P18  Rno-Mir-154-P18 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 131860896-131860953 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUUCCGUGCUAACCUUUGGUACUUGGAGAGUGGUUAUCCCUGUCCUGUUCGUUUUGCUCAUGUCGAAUCGUACAGGGUCAUCCACUUUUUCAGUAUCAAGAGCGCAGACUCUGGAGC
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Structure
        10          20        30        40        50        
CUUUCCGUGCUAACCUU--|      UG        UUAU      CCU     UUUUG 
                   UGGUACU  GAGAGUGG    CCCUGU   GUUCG     C
                   ACUAUGA  UUUUCACC    GGGACA   UAAGC     U
CGAGGUCUCAGACGCGAGA^      CU        UACU      UGC     UGUAC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
-   +
To
Star sequence

Cja-Mir-154-P18_5p* (predicted)
mirBase accessionNone
Sequence 
0- GUGGUUAUCCCUGUCCUGUUCG -22
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Mature sequence

Cja-Mir-154-P18_3p
mirBase accessionNone
Sequence 
36- AAUCGUACAGGGUCAUCCACUU -58
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