| MirGeneDB ID | Cja-Mir-154-P19 |
|---|---|
| Family name | MIR-154 (all species) |
| Seed | UCAUACA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-154-P1 Cja-Mir-154-P2 Cja-Mir-154-P3 Cja-Mir-154-P4 Cja-Mir-154-P5 Cja-Mir-154-P6a Cja-Mir-154-P6b Cja-Mir-154-P7 Cja-Mir-154-P8a Cja-Mir-154-P9 Cja-Mir-154-P10 Cja-Mir-154-P11 Cja-Mir-154-P12 Cja-Mir-154-P14 Cja-Mir-154-P16a Cja-Mir-154-P16b Cja-Mir-154-P17 Cja-Mir-154-P18 Cja-Mir-154-P20 Cja-Mir-154-P21 Cja-Mir-154-P22 Cja-Mir-154-P23 Cja-Mir-154-P24 Cja-Mir-154-P25 Cja-Mir-154-P26 Cja-Mir-154-P28 Cja-Mir-154-P29 Cja-Mir-154-P30 Cja-Mir-154-P31 Cja-Mir-154-P32 Cja-Mir-154-P33 Cja-Mir-154-P34 |
| Orthologues | Bta-Mir-154-P19 Cfa-Mir-154-P19 Cpo-Mir-154-P19 Dno-Mir-154-P19 Eca-Mir-154-P19-v1 Eca-Mir-154-P19-v2 Ete-Mir-154-P19 Hsa-Mir-154-P19 Laf-Mir-154-P19 Mml-Mir-154-P19 Mmu-Mir-154-P19 Ocu-Mir-154-P19 Pab-Mir-154-P19 Rno-Mir-154-P19 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021924.1: 131861757-131861820 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UUCCCGUCCGUGCCGCUGUUUCAUACCUGAGGAGAAAUUAUCCUUGAUGUGUUCGCUUUAUUUAUGAUGAAUCAUACAAGGACAAUUUCUCUUUGAGUAUCAAAUCCUGCCUCGGCAGACUUCCGet precursor sequence |
| Structure | 10 20 30 40 50 60 UUCCCGUCCGUGCCGCU--| C CU A A - GCUUUA GUUU AUAC GAGGAGAAAUU UCCUUG UGUG UUC U UAAA UAUG UUUCUCUUUAA AGGAAC AUAC AAG U CCUUCAGACGGCUCCGUCC^ C AG C - U UAGUAU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Cja-Mir-154-P19_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGAGAAAUUAUCCUUGAUGUGUUC -24
Get sequence
|
| Mature sequence | Cja-Mir-154-P19_3p (predicted) |
| mirBase accession | None |
| Sequence |
40- AUCAUACAAGGACAAUUUCUCUUU -64
Get sequence
|
