Mir-154-P19

MirGeneDB ID

Cja-Mir-154-P19

Family name

MIR-154 (all species)

Seed

UCAUACA

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-154-P1 Cja-Mir-154-P2 Cja-Mir-154-P3 Cja-Mir-154-P4 Cja-Mir-154-P5 Cja-Mir-154-P6a Cja-Mir-154-P6b Cja-Mir-154-P7 Cja-Mir-154-P8a Cja-Mir-154-P9 Cja-Mir-154-P10 Cja-Mir-154-P11 Cja-Mir-154-P12 Cja-Mir-154-P14 Cja-Mir-154-P16a Cja-Mir-154-P16b Cja-Mir-154-P17 Cja-Mir-154-P18 Cja-Mir-154-P20 Cja-Mir-154-P21 Cja-Mir-154-P22 Cja-Mir-154-P23 Cja-Mir-154-P24 Cja-Mir-154-P25 Cja-Mir-154-P26 Cja-Mir-154-P28 Cja-Mir-154-P29 Cja-Mir-154-P30 Cja-Mir-154-P31 Cja-Mir-154-P32 Cja-Mir-154-P33 Cja-Mir-154-P34

Orthologues

Bta-Mir-154-P19 Cfa-Mir-154-P19 Cpo-Mir-154-P19 Dno-Mir-154-P19 Eca-Mir-154-P19-v1 Eca-Mir-154-P19-v2 Ete-Mir-154-P19 Hsa-Mir-154-P19 Laf-Mir-154-P19 Mml-Mir-154-P19 Mmu-Mir-154-P19 Ocu-Mir-154-P19 Pab-Mir-154-P19 Rno-Mir-154-P19

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021924.1: 131861757-131861820 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUCCCGUCCGUGCCGCUGUUUCAUACCUGAGGAGAAAUUAUCCUUGAUGUGUUCGCUUUAUUUAUGAUGAAUCAUACAAGGACAAUUUCUCUUUGAGUAUCAAAUCCUGCCUCGGCAGACUUCC

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Structure

        10          20        30        40        50         60 
UUCCCGUCCGUGCCGCU--|   C    CU           A      A    -   GCUUUA 
                   GUUU AUAC  GAGGAGAAAUU UCCUUG UGUG UUC      U
                   UAAA UAUG  UUUCUCUUUAA AGGAAC AUAC AAG      U
CCUUCAGACGGCUCCGUCC^   C    AG           C      -    U   UAGUAU 
  120       110       100        90        80         70

Deep sequencing

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Cja-Mir-154-P19_5p* (predicted)

mirBase accession

None

Sequence

0- GGAGAAAUUAUCCUUGAUGUGUUC -24

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Mature sequence

Cja-Mir-154-P19_3p (predicted)

mirBase accession

None

Sequence

40- AUCAUACAAGGACAAUUUCUCUUU -64

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