MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-154-P29

Family name MIR-154 (all species)
Seed UCACACA
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-154-P1  Cja-Mir-154-P2  Cja-Mir-154-P3  Cja-Mir-154-P4  Cja-Mir-154-P5  Cja-Mir-154-P6a  Cja-Mir-154-P6b  Cja-Mir-154-P7  Cja-Mir-154-P8a  Cja-Mir-154-P9  Cja-Mir-154-P10  Cja-Mir-154-P11  Cja-Mir-154-P12  Cja-Mir-154-P14  Cja-Mir-154-P16a  Cja-Mir-154-P16b  Cja-Mir-154-P17  Cja-Mir-154-P18  Cja-Mir-154-P19  Cja-Mir-154-P20  Cja-Mir-154-P21  Cja-Mir-154-P22  Cja-Mir-154-P23  Cja-Mir-154-P24  Cja-Mir-154-P25  Cja-Mir-154-P26  Cja-Mir-154-P28  Cja-Mir-154-P30  Cja-Mir-154-P31  Cja-Mir-154-P32  Cja-Mir-154-P33  Cja-Mir-154-P34 
Orthologues Bta-Mir-154-P29  Cfa-Mir-154-P29  Cpo-Mir-154-P29  Dno-Mir-154-P29  Eca-Mir-154-P29  Ete-Mir-154-P29  Hsa-Mir-154-P29  Laf-Mir-154-P29  Mml-Mir-154-P29  Mmr-Mir-154-P29  Mmu-Mir-154-P29  Ocu-Mir-154-P29  Pab-Mir-154-P29  Rno-Mir-154-P29 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 131876823-131876882 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGCCCGUGCUGACGUUUGACCCUUGAGCAGAGGUUGCCCUUGGUGAAUUCGCUUUAUUUAUGUUGAAUCACACAAAGGCAACUUUUGUUUGAGUAUCAAAUCCUGCUUGGGAUGGCUU
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Structure
        10          20        30        40         50         
CUUGCCCGUGCUGACGU--    CC  UG             C   -|   A   GCUUUA 
                   UUGA  CU  AGCAGAGGUUGCC UUG GUGA UUC      U
                   AACU  GA  UUGUUUUCAACGG AAC CACU AAG      U
UUCGGUAGGGUUCGUCCUA    AU  GU             A   A^   -   UUGUAU 
.       110       100        90        80        70         60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
-   +
To
Star sequence

Cja-Mir-154-P29_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGAGGUUGCCCUUGGUGAAUUC -22
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Mature sequence

Cja-Mir-154-P29_3p (predicted)
mirBase accessionNone
Sequence 
38- AUCACACAAAGGCAACUUUUGU -60
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