Mir-154-P29

MirGeneDB ID

Ocu-Mir-154-P29

Family name

MIR-154 (all species)

Seed

GAGGUUG

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-377

Paralogues

Ocu-Mir-154-P1 Ocu-Mir-154-P2-v1 Ocu-Mir-154-P2-v2 Ocu-Mir-154-P3-v1 Ocu-Mir-154-P3-v2 Ocu-Mir-154-P5 Ocu-Mir-154-P6a-v1 Ocu-Mir-154-P6a-v2 Ocu-Mir-154-P7 Ocu-Mir-154-P8-o1 Ocu-Mir-154-P11 Ocu-Mir-154-P12 Ocu-Mir-154-P14 Ocu-Mir-154-P17 Ocu-Mir-154-P18 Ocu-Mir-154-P19 Ocu-Mir-154-P20 Ocu-Mir-154-P21 Ocu-Mir-154-P23 Ocu-Mir-154-P24 Ocu-Mir-154-P25 Ocu-Mir-154-P26 Ocu-Mir-154-P28-v1 Ocu-Mir-154-P28-v2 Ocu-Mir-154-P30 Ocu-Mir-154-P32 Ocu-Mir-154-P33 Ocu-Mir-154-P34

Orthologues

Bta-Mir-154-P29 Cfa-Mir-154-P29 Cja-Mir-154-P29 Cpo-Mir-154-P29 Dno-Mir-154-P29 Eca-Mir-154-P29 Ete-Mir-154-P29 Hsa-Mir-154-P29 Laf-Mir-154-P29 Mml-Mir-154-P29 Mmr-Mir-154-P29 Mmu-Mir-154-P29 Pab-Mir-154-P29 Rno-Mir-154-P29

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(oryCun2_add)

chrUn0352: 150228-150287 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P29)

Mir-154-P1 chrUn0352: 121687-121745 [+] UCSC Ensembl
Mir-154-P2-v2 chrUn0352: 122886-122943 [+] UCSC Ensembl
Mir-154-P2-v1 chrUn0352: 122887-122942 [+] UCSC Ensembl
Mir-154-P3-v1 chrUn0352: 123314-123368 [+] UCSC Ensembl
Mir-154-P3-v2 chrUn0352: 123315-123367 [+] UCSC Ensembl
Mir-154-P5 chrUn0352: 124893-124948 [+] UCSC Ensembl
Mir-154-P6a-v1 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P6a-v2 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P7 chrUn0352: 125317-125376 [+] UCSC Ensembl
Mir-154-P8-o1 chrUn0352: 126028-126087 [+] UCSC Ensembl
Mir-154-P12 chrUn0352: 130083-130140 [+] UCSC Ensembl
Mir-376-P2 chrUn0352: 132903-132959 [+] UCSC Ensembl
Mir-376-P3 chrUn0352: 133217-133274 [+] UCSC Ensembl
Mir-154-P14 chrUn0352: 133369-133421 [+] UCSC Ensembl
Mir-376-P4 chrUn0352: 133511-133568 [+] UCSC Ensembl
Mir-376-P5 chrUn0352: 133845-133902 [+] UCSC Ensembl
Mir-154-P17 chrUn0352: 136582-136644 [+] UCSC Ensembl
Mir-154-P18 chrUn0352: 137030-137087 [+] UCSC Ensembl
Mir-154-P19 chrUn0352: 137513-137576 [+] UCSC Ensembl
Mir-154-P20 chrUn0352: 138028-138086 [+] UCSC Ensembl
Mir-154-P21 chrUn0352: 139340-139398 [+] UCSC Ensembl
Mir-154-P23 chrUn0352: 141248-141305 [+] UCSC Ensembl
Mir-154-P24 chrUn0352: 142718-142775 [+] UCSC Ensembl
Mir-134 chrUn0352: 143048-143107 [+] UCSC Ensembl
Mir-154-P25 chrUn0352: 143743-143801 [+] UCSC Ensembl
Mir-154-P26 chrUn0352: 147896-147953 [+] UCSC Ensembl
Mir-154-P28-v2 chrUn0352: 149011-149066 [+] UCSC Ensembl
Mir-154-P28-v1 chrUn0352: 149012-149065 [+] UCSC Ensembl
Mir-154-P29 chrUn0352: 150228-150287 [+] UCSC Ensembl
Mir-541 chrUn0352: 152092-152157 [+] UCSC Ensembl
Mir-154-P32 chrUn0352: 152953-153008 [+] UCSC Ensembl
Mir-154-P33 chrUn0352: 153189-153244 [+] UCSC Ensembl
Mir-154-P34 chrUn0352: 153728-153783 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCGGGCCCCGCUGACCUUUGAUCCUUGAGCAGAGGUUGCCCUUGGUGAAUUCGCUUUAUUGAUGUUGAAUCACACAAAGGCAACUUUUGUUUGAGCAUCAAAUCCUGCUUGGGAUGGCUG

Get precursor sequence

Structure

        10          20        30        40         50         
UCGGGCCCCGCUGACCU--     C  UG             C   -|   A   GCUUUA 
                   UUGAU CU  AGCAGAGGUUGCC UUG GUGA UUC      U
                   AACUA GA  UUGUUUUCAACGG AAC CACU AAG      U
GUCGGUAGGGUUCGUCCUA     C  GU             A   A^   -   UUGUAG 
.       110       100        90        80        70         60