MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-541

Family name MIR-541 (all species)
Seed AAGGAUU
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-541
Paralogues
Orthologues Bta-Mir-541  Cja-Mir-541  Cpo-Mir-541  Dno-Mir-541  Eca-Mir-541  Ete-Mir-541  Hsa-Mir-541  Laf-Mir-541  Mml-Mir-541  Mmr-Mir-541  Mmu-Mir-541  Pab-Mir-541  Rno-Mir-541 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chrUn0352: 152092-152157 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-541)
Mir-154-P1 chrUn0352: 121687-121745 [+] UCSC Ensembl
Mir-154-P2-v2 chrUn0352: 122886-122943 [+] UCSC Ensembl
Mir-154-P2-v1 chrUn0352: 122887-122942 [+] UCSC Ensembl
Mir-154-P3-v1 chrUn0352: 123314-123368 [+] UCSC Ensembl
Mir-154-P3-v2 chrUn0352: 123315-123367 [+] UCSC Ensembl
Mir-154-P5 chrUn0352: 124893-124948 [+] UCSC Ensembl
Mir-154-P6a-v1 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P6a-v2 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P7 chrUn0352: 125317-125376 [+] UCSC Ensembl
Mir-154-P8-o1 chrUn0352: 126028-126087 [+] UCSC Ensembl
Mir-154-P12 chrUn0352: 130083-130140 [+] UCSC Ensembl
Mir-376-P2 chrUn0352: 132903-132959 [+] UCSC Ensembl
Mir-376-P3 chrUn0352: 133217-133274 [+] UCSC Ensembl
Mir-154-P14 chrUn0352: 133369-133421 [+] UCSC Ensembl
Mir-376-P4 chrUn0352: 133511-133568 [+] UCSC Ensembl
Mir-376-P5 chrUn0352: 133845-133902 [+] UCSC Ensembl
Mir-154-P17 chrUn0352: 136582-136644 [+] UCSC Ensembl
Mir-154-P18 chrUn0352: 137030-137087 [+] UCSC Ensembl
Mir-154-P19 chrUn0352: 137513-137576 [+] UCSC Ensembl
Mir-154-P20 chrUn0352: 138028-138086 [+] UCSC Ensembl
Mir-154-P21 chrUn0352: 139340-139398 [+] UCSC Ensembl
Mir-154-P23 chrUn0352: 141248-141305 [+] UCSC Ensembl
Mir-154-P24 chrUn0352: 142718-142775 [+] UCSC Ensembl
Mir-134 chrUn0352: 143048-143107 [+] UCSC Ensembl
Mir-154-P25 chrUn0352: 143743-143801 [+] UCSC Ensembl
Mir-154-P26 chrUn0352: 147896-147953 [+] UCSC Ensembl
Mir-154-P28-v2 chrUn0352: 149011-149066 [+] UCSC Ensembl
Mir-154-P28-v1 chrUn0352: 149012-149065 [+] UCSC Ensembl
Mir-154-P29 chrUn0352: 150228-150287 [+] UCSC Ensembl
Mir-541 chrUn0352: 152092-152157 [+] UCSC Ensembl
Mir-154-P32 chrUn0352: 152953-153008 [+] UCSC Ensembl
Mir-154-P33 chrUn0352: 153189-153244 [+] UCSC Ensembl
Mir-154-P34 chrUn0352: 153728-153783 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGCGUUCUGAACUCGAGCCAACGUCAGGGAAAGGAUUCUGCUGUCGGUCCCACUCCAAAGUUCACAGAAUGGGUGGUGGGCACAGAAUCCAGACUCUGCUUGUGGCACACGUCGUCUGGUCCCGG
Get precursor sequence
Structure
        10          20        30        40        50        60    
GGGCGUUCUGAACUCGA--|   ACGU     AAA        C    G UC     CCAAAGUU 
                   GCCA    CAGGG   GGAUUCUG UGUC G  CCACU        \
                   CGGU    GUCUC   CCUAAGAC ACGG U  GGUGG        C
GGCCCUGGUCUGCUGCACA^   GUUC     AGA        -    G --     GUAAGACA 
    120       110       100        90         80          70
Deep sequencing
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CommentThe rabbit is arm switched relative to the other mammals analyzed.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Mature sequence

Ocu-Mir-541_5p

mirBase accessionMIMAT0048523
Sequence
0- AAAGGAUUCUGCUGUCGGUCCCACU -25
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Star sequence

Ocu-Mir-541_3p*

mirBase accessionMIMAT0048524
Sequence
44- UGGUGGGCACAGAAUCCAGACU -66
Get sequence