| MirGeneDB ID | Laf-Mir-541 |
|---|---|
| Family name | MIR-541 (all species) |
| Seed | AAGGAUU |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-541 Cja-Mir-541 Cpo-Mir-541 Dno-Mir-541 Eca-Mir-541 Ete-Mir-541 Hsa-Mir-541 Mml-Mir-541 Mmr-Mir-541 Mmu-Mir-541 Ocu-Mir-541 Pab-Mir-541 Rno-Mir-541 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010036.1: 75517877-75517942 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GGGCUUUCAGAACUCAUGCCAAUGUCAGAAAAAGGAUUCUGCUGUCGGUCCCACUCCAAAUGUCUCAGAAUGGGUGGUGGGCACAGAAUCCGGACUCUGCUUGUGGCACAUGUCAACAGGCCCAUGGet precursor sequence |
| Structure | 10 20 30 40 50 60 GGGCUUUCAGAACUCAU-- AU-|U AAAA C G UC CCAAAUGU GCCA G CAGA GGAUUCUG UGUC G CCACU \ CGGU C GUCU CCUAAGAC ACGG U GGUGG C GUACCCGGACAACUGUACA GUU^- CAGG - G -- GUAAGACU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Laf-Mir-541_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AAAGGAUUCUGCUGUCGGUCCCACU -25
Get sequence
|
| Star sequence | Laf-Mir-541_3p* (predicted) |
| mirBase accession | None |
| Sequence |
44- UGGUGGGCACAGAAUCCGGACU -66
Get sequence
|
