MirGeneDB 3.0
MirGeneDB ID

Mmr-Mir-541

Family name MIR-541 (all species)
Seed AAGGAUU
Species Gray mouse lemur (Microcebus murinus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-541  Cja-Mir-541  Cpo-Mir-541  Dno-Mir-541  Eca-Mir-541  Ete-Mir-541  Hsa-Mir-541  Laf-Mir-541  Mml-Mir-541  Mmu-Mir-541  Ocu-Mir-541  Pab-Mir-541  Rno-Mir-541 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000165445.3_Mmur_3.0_genomic)		 CM007663.1: 12758520-12758585 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-541)		 Mir-154-P2-v2 CM007663.1: 12719569-12719626 [+] UCSC Ensembl
Mir-154-P2-v1 CM007663.1: 12719570-12719625 [+] UCSC Ensembl
Mir-154-P37 CM007663.1: 12721366-12721423 [+] UCSC Ensembl
Mir-154-P17 CM007663.1: 12739835-12739897 [+] UCSC Ensembl
Mir-154-P22 CM007663.1: 12745610-12745663 [+] UCSC Ensembl
Mir-154-P30 CM007663.1: 12759249-12759302 [+] UCSC Ensembl
Mir-154-P33 CM007663.1: 12759838-12759893 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAGACUGAGAACUCAUGCCAACGUCAGGGAAAGGAUUCUGCUGUCGGUCCCACUCCAAAGUUGAUAAAAUGGGUGGUGGGCACAGAAUCCAGACUCUGCUUGUGGCAUAUGUCGUCGGGUCCCUG
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Structure
        10          20        30        40        50        60    
CCAGACUGAGAACUCAU--|   ACGU     AAA        C    G UC     CCAAAGUU 
                   GCCA    CAGGG   GGAUUCUG UGUC G  CCACU        \
                   CGGU    GUCUC   CCUAAGAC ACGG U  GGUGG        G
GUCCCUGGGCUGCUGUAUA^   GUUC     AGA        -    G --     GUAAAAUA 
    120       110       100        90         80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Mu Mu Mu Mu Mu Mu Mu Mu
Mature sequence

Mmr-Mir-541_5p
mirBase accessionNone
Sequence 
0- AAAGGAUUCUGCUGUCGGUCCCACU -25
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Star sequence

Mmr-Mir-541_3p*
mirBase accessionNone
Sequence 
44- UGGUGGGCACAGAAUCCAGACU -66
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