| MirGeneDB ID | Cja-Mir-541 |
|---|---|
| Family name | MIR-541 (all species) |
| Seed | GGUGGGC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-541 Cpo-Mir-541 Dno-Mir-541 Eca-Mir-541 Ete-Mir-541 Hsa-Mir-541 Laf-Mir-541 Mml-Mir-541 Mmr-Mir-541 Mmu-Mir-541 Ocu-Mir-541 Pab-Mir-541 Rno-Mir-541 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021924.1: 131879396-131879461 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GAGUUCUCCGAACUCACGCCAACGUCAGGGAAAGGAUUCUGCUGUCGGUCCCACUCCAAAGUUCACAGAAUGGGUGGUGGGCACAGAAUCCGGACUCUGCUGGUGGCAUCCGUCGUCCGGCCCGACGet precursor sequence |
| Structure | 10 20 30 40 50 60 GAGUUCUCCGAACUCAC-- A U AAA C G U--| ACUCCAAAG GCCA CG CAGGG GGAUUCUG UGUC G CCC \ CGGU GU GUCUC CCUAAGAC ACGG U GGG U CAGCCCGGCCUGCUGCCUA G C AGG - G GGU^ UAAGACACU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Cja-Mir-541_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AAAGGAUUCUGCUGUCGGUCCC -22
Get sequence
|
| Mature sequence | Cja-Mir-541_3p (predicted) |
| mirBase accession | None |
| Sequence |
44- UGGUGGGCACAGAAUCCGGACU -66
Get sequence
|
