MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-541

Family name MIR-541 (all species)
Seed GGUGGGC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-541  Cpo-Mir-541  Dno-Mir-541  Eca-Mir-541  Ete-Mir-541  Hsa-Mir-541  Laf-Mir-541  Mml-Mir-541  Mmr-Mir-541  Mmu-Mir-541  Ocu-Mir-541  Pab-Mir-541  Rno-Mir-541 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 131879396-131879461 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGUUCUCCGAACUCACGCCAACGUCAGGGAAAGGAUUCUGCUGUCGGUCCCACUCCAAAGUUCACAGAAUGGGUGGUGGGCACAGAAUCCGGACUCUGCUGGUGGCAUCCGUCGUCCGGCCCGAC
Get precursor sequence
Structure
        10          20        30        40          50        60  
GAGUUCUCCGAACUCAC--    A  U     AAA        C    G U--|  ACUCCAAAG 
                   GCCA CG CAGGG   GGAUUCUG UGUC G   CCC         \
                   CGGU GU GUCUC   CCUAAGAC ACGG U   GGG         U
CAGCCCGGCCUGCUGCCUA    G  C     AGG        -    G GGU^  UAAGACACU 
    120       110       100        90         80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-541_5p* (predicted)
mirBase accessionNone
Sequence 
0- AAAGGAUUCUGCUGUCGGUCCC -22
Get sequence
Mature sequence

Cja-Mir-541_3p (predicted)
mirBase accessionNone
Sequence 
44- UGGUGGGCACAGAAUCCGGACU -66
Get sequence