Mir-541

MirGeneDB ID

Rno-Mir-541

Family name

MIR-541 (all species)

Seed

AGGGAUU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-541

Paralogues

Orthologues

Bta-Mir-541 Cpo-Mir-541 Dno-Mir-541 Ete-Mir-541 Hsa-Mir-541 Mml-Mir-541 Mmu-Mir-541 Ocu-Mir-541

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rn6)

chr6: 133892668-133892733 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-541)

Mir-154-P7 chr6: 133857715-133857772 [+] UCSC Ensembl
Mir-154-P13 chr6: 133858859-133858914 [+] UCSC Ensembl
Mir-154-P2-v1 chr6: 133859329-133859383 [+] UCSC Ensembl
Mir-154-P2-v2 chr6: 133859330-133859382 [+] UCSC Ensembl
Mir-154-P8 chr6: 133860500-133860556 [+] UCSC Ensembl
Mir-154-P3a-v2 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P3a-v1 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P26 chr6: 133861509-133861566 [+] UCSC Ensembl
Mir-154-P4-o1 chr6: 133862190-133862249 [+] UCSC Ensembl
Mir-154-P18 chr6: 133864385-133864440 [+] UCSC Ensembl
Mir-154-P29-v1 chr6: 133864729-133864785 [+] UCSC Ensembl
Mir-154-P29-v2 chr6: 133864730-133864784 [+] UCSC Ensembl
Mir-666 chr6: 133866541-133866601 [+] UCSC Ensembl
Mir-154-P22 chr6: 133866672-133866729 [+] UCSC Ensembl
Mir-154-P19 chr6: 133868298-133868357 [+] UCSC Ensembl
Mir-667 chr6: 133869584-133869647 [+] UCSC Ensembl
Mir-376-P4 chr6: 133872453-133872510 [+] UCSC Ensembl
Mir-376-P2 chr6: 133873110-133873167 [+] UCSC Ensembl
Mir-376-P1 chr6: 133873618-133873675 [+] UCSC Ensembl
Mir-154-P34 chr6: 133874161-133874223 [+] UCSC Ensembl
Mir-154-P9 chr6: 133876615-133876677 [+] UCSC Ensembl
Mir-154-P17 chr6: 133877137-133877194 [+] UCSC Ensembl
Mir-154-P21 chr6: 133877840-133877901 [+] UCSC Ensembl
Mir-544 chr6: 133879179-133879235 [+] UCSC Ensembl
Mir-154-P10 chr6: 133884190-133884247 [+] UCSC Ensembl
Mir-134 chr6: 133884554-133884614 [+] UCSC Ensembl
Mir-154-P15 chr6: 133885310-133885368 [+] UCSC Ensembl
Mir-154-P1 chr6: 133888600-133888657 [+] UCSC Ensembl
Mir-154-P20-v2 chr6: 133889296-133889351 [+] UCSC Ensembl
Mir-154-P20-v1 chr6: 133889297-133889350 [+] UCSC Ensembl
Mir-154-P6 chr6: 133890697-133890756 [+] UCSC Ensembl
Mir-541 chr6: 133892668-133892733 [+] UCSC Ensembl
Mir-154-P36 chr6: 133893432-133893485 [+] UCSC Ensembl
Mir-154-P14 chr6: 133893579-133893634 [+] UCSC Ensembl
Mir-154-P5 chr6: 133893706-133893761 [+] UCSC Ensembl
Mir-154-P12 chr6: 133894007-133894062 [+] UCSC Ensembl
Mir-3072 chr6: 133898823-133898879 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCCUGUGUGAACUCUUGCCAAAAUCAGAGAAGGGAUUCUGAUGUUGGUCACACUCCAAGAAUUUUAAAAUGAGUGGCGAACACAGAAUCCAUACUCUGCUUAUGGCCUAAGUCAAUGGAUCCUGA

Get precursor sequence

Structure

        10          20        30        40        50        60   
AGCCUGUGUGAACUCUU--|   A  U     AAG        A    G     ACUCCAAGAA 
                   GCCA AA CAGAG   GGAUUCUG UGUU GUCAC          \
                   CGGU UU GUCUC   CCUAAGAC ACAA CGGUG          U
AGUCCUAGGUAACUGAAUC^   A  C     AUA        -    G     AGUAAAAUUU 
    120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Mature sequence

Rno-Mir-541_5p

mirBase accession

MIMAT0003177

Sequence

0- AAGGGAUUCUGAUGUUGGUCACA -23

Get sequence

Proposed targets

microrna.org: MIMAT0003177
TargetScanVert: rno-miR-541-5p
miRDB: MIMAT0003177

Star sequence

Rno-Mir-541_3p*

mirBase accession

MIMAT0017213

Sequence

44- UGGCGAACACAGAAUCCAUACU -66

Get sequence

Proposed targets

TargetScanVert: rno-miR-541-3p
miRDB: MIMAT0017213